Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01647 ATGGCGAAACCTGGTCGAGGTCGTCGCTCACCACCGTCGGGTTCCGATTCTCGCTCTTCCTCTCGTTCCTCCTCGCTCTCTTCTCGCTCCTCCTCTCGCTCTCGCTCACGTTCCAGATCCTTCTCTTCTACTTCCTCTTCTCCTTCTCGCAGTTCCCGAAGCCGAAGCCCTCCTCCTCAGAAACGGAAAAGTCCTGCTGAAGCAGTTAGGCGAGGTCGATCTCCTCCTCCTCCTCCTCCTCCATCTAAGAGAACTTCTCCTCCATCTAAGAGAATTTCTCCTCCGTCTAAGAGAACTTCTCCCCCAAGGAAACCTTCCCCTGTACGTGAATCACTTGTTCTTCATGTGGAGAAACTCAGCAGGAATGTTAATGAAGGCCATTTGAAAGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTTAATCTTCCAAAAGGATACGGATATGTGCAATTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAAATAGATGGTAACGTCATTAAAGCAAGATTTACTCTACCTCCAAGACAGAAAGTTTCACCACCCCCAAAGGCCTCTGCTGTTGCTCCAAAGAGAGAGGGCCCTAGGTCTGATAATGCTGGTGCAGATATTGATAAAGATGGGCCGAAGCGTCCAAGAGAATCTTCTCCTCGGAGAAAACCTCCTCCCTCACCACGGAGGAGATCTCCAGTGCCTCGAAGAGTTGGATCTCCAAGACGACCAGATTCTCCTCGCCGTCGTGCAGATTCTCCTGTCCGTCGTCGGTTAGACTCTCCTTATCGTCGTGGAGACACACCTCCCAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGGCGCCTTAGATCCCCTGCAAGGGTCTCGCCTAGAAGGATGCGTGGAAGCCCAGGTCGGAGACGTTCTCCTCCTCCTCTGAGGCGCCGTTCACCACCTAGACGAGCTCGTAGTCCCCCTAGAAGGTCTCCAATCAGTCGTAGGCGCAGTCGCTCTCCAATACGTAGGCCTGCACGCTCACGCTCGAGATCATTCTCACCTCGCAGAGGTCGGCCACCTGTGAGACGGGGGAGGTCATCATCTTACTCTGATTCACCAAGTCCTCGCAAGATATCCAGGAGATCAAAGAGTCGCAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCCCCAGCTCGTAAACCATAG 1272 0.5267 MAKPGRGRRSPPSGSDSRSSSRSSSLSSRSSSRSRSRSRSFSSTSSSPSRSSRSRSPPPQKRKSPAEAVRRGRSPPPPPPPSKRTSPPSKRISPPSKRTSPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKREGPRSDNAGADIDKDGPKRPRESSPRRKPPPSPRRRSPVPRRVGSPRRPDSPRRRADSPVRRRLDSPYRRGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRMRGSPGRRRSPPPLRRRSPPRRARSPPRRSPISRRRSRSPIRRPARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKISRRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01647 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Rops7g01647 423 CDD RRM_RNPS1 114 186 IPR034201 -
Rops7g01647 423 MobiDBLite consensus disorder prediction 305 374 - -
Rops7g01647 423 MobiDBLite consensus disorder prediction 212 237 - -
Rops7g01647 423 MobiDBLite consensus disorder prediction 1 110 - -
Rops7g01647 423 MobiDBLite consensus disorder prediction 12 59 - -
Rops7g01647 423 SMART rrm1_1 113 186 IPR000504 GO:0003723
Rops7g01647 423 MobiDBLite consensus disorder prediction 71 102 - -
Rops7g01647 423 MobiDBLite consensus disorder prediction 403 423 - -
Rops7g01647 423 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 3 279 - -
Rops7g01647 423 Gene3D - 10 196 IPR012677 -
Rops7g01647 423 MobiDBLite consensus disorder prediction 254 287 - -
Rops7g01647 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Rops7g01647 423 SUPERFAMILY RNA-binding domain, RBD 100 205 IPR035979 GO:0003676
Rops7g01647 423 MobiDBLite consensus disorder prediction 189 423 - -
Rops7g01647 423 FunFam Serine/arginine-rich splicing factor SR45 3 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01647 Rops-Chr7 25162644 25168456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01647 114 187 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 3.71e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01647 K14325 - gmx:100783566 258.84