Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01633 ATGAGCAACATAAGCATGGTAGAGGCAAAACTGCCACCAGGGTTCAGGTTCCATCCTAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTTACACACAATGATTCCCTTCTCATGATTGATGTTGATCTTAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAAGATTGGTATTTTTTCACACAAAGAGACCGCAAATATGCAACAGGGCTAAGAACAAATCGTGCCACTGCTTCAGGGTATTGGAAGGCCACAGGGAAGGATAGGCCTATCCTTCGAAAGGGCACTCTTGTAGGGATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACTGAGTGGGTCATGCATGAGTTTCGCATTGAGGGTCCTCATGGCCCTCCTAAATTTTCATCTTCCAAGGAAGATTGGGTTTTATGTAGAGTGTTCTACAAAAACAGAGAAGTTGCTGACAAACCTAGTATGGGTAGCTGCTATGATGACACTGGCTCTTCATCACTTCCTGCATTGATGGACTCATACATCAGTTTTGACCATGCTCAAGTCCATGCAGATGAATATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAAACCCAAACCAACCCCATTTTCAACCACACTACCAACATGGAGCCAAAATTCCCTGCCAACAATGCAACTACATATGGAGGAGCACCCAATTTGGGTTATAGCTTAGACCCTTTATCTTGTGACAGAAAAGTATTAAAAGCTGTTTTGAGTCAGCTCACAAAAATGGAAAGAAACCCCCTTAACCAAAGTCTAAAAGGGTCACCAAGTTTAGGAGAAGGAAGTTCAGAGAGTTATCTATCTGAAGTGGGCATGCCCCACATGTGGAACAATTATTGA 909 0.4367 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHNDSLLMIDVDLNKCEPWDIPETACVGGKDWYFFTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKFSSSKEDWVLCRVFYKNREVADKPSMGSCYDDTGSSSLPALMDSYISFDHAQVHADEYEQVPCFSIFSQTQTNPIFNHTTNMEPKFPANNATTYGGAPNLGYSLDPLSCDRKVLKAVLSQLTKMERNPLNQSLKGSPSLGEGSSESYLSEVGMPHMWNNY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01633 302 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Rops7g01633 302 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Rops7g01633 302 FunFam NAC domain-containing protein 100-like 20 162 - -
Rops7g01633 302 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Rops7g01633 302 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Rops7g01633 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01633 Rops-Chr7 24916089 24921058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01633 2 300 NAC Transcription Factor Family AT1G56010 61.442 6.65e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g01633 NAM 5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01633 - - gmx:100301890 563.148