Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01618 ATGACCTGTTTTCCTTTCTTATTCAGTAAGGCGTCTTCTTCAGCAAGACAAAATCTAGACAATGATGAAGATATTTCAGGCATTGATAATGTTAGAATCTATACCTACAAAGAACTAAGAAATGCCACTGAGGATTTTAGTCCGGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGGCTTAAAGATGGAAAACTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAAACAAGGAGTTAAGGAGTTCTTTGCAGAGATTAACATGATCTCCGAAATAGAGCATGAAAATTTGGTTAAGTTATATGGTTGTTGTGTCGAAAGAAATAACAGGATATTAGTCTACAATTACCTTGAGAATAACAGCCTTCAACAAACTCTTCTAGGTGGAGGTCAGAGTAGTATCTACTTCGATTGGCGTACGCGATCTAGAATATGCATCGGGGTTGCACGTGGGCTTACCTTTCTTCATGAAGAAGTAAGGCCTTATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAGGCCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAGGCTTATTCCAGATAACAAGACTCATGTCAGCACACGTGTAGCAGGAACACTAGGTTATTTGGCACCAGAGTATGCAATAGGGGGAAAGCTAACACGGAAAGCAGACATTTACAGTTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGGAGATGTAACACAAATTCACGATTACCAATAGAAGAACAATTTATTCTAGAAAGGGCATGGGAACTTTATGAACGAAATGAATTAGTAGGGCTGGTAGATATATCACTAAATGGGGAATTTGAGGCTGAGCAGGCTTGTAAATTTCTCAAGATTGGCCTTCTTTGCACTCAAGAATCTCCGAGTCAACGACCATCCATGTCTTCAGTGGTCAAGATGCTCACTGGAAAAATGGGTGTTGATGACAGGAAGATAACAAAACCTGCCTTAATTTCTGATTTTATGGACCTCAAAGTTAGAAAGAAACAAGAAAGTAATATTGATATGAAGACTTCATCCACATACAATGCATCCTCTGCCTCAGACAACCAAGACACTACCATGTCCTTAGCTACAACTTCAACCTTCACTGCTAGGTATGACAAAGCATGTAAGCATCAATAG 1173 0.3939 MTCFPFLFSKASSSARQNLDNDEDISGIDNVRIYTYKELRNATEDFSPANKIGEGGFGSVYKGRLKDGKLAAIKVLSAESKQGVKEFFAEINMISEIEHENLVKLYGCCVERNNRILVYNYLENNSLQQTLLGGGQSSIYFDWRTRSRICIGVARGLTFLHEEVRPYIVHRDIKASNILLDKGLTPKISDFGLARLIPDNKTHVSTRVAGTLGYLAPEYAIGGKLTRKADIYSFGVLLVEIVSGRCNTNSRLPIEEQFILERAWELYERNELVGLVDISLNGEFEAEQACKFLKIGLLCTQESPSQRPSMSSVVKMLTGKMGVDDRKITKPALISDFMDLKVRKKQESNIDMKTSSTYNASSASDNQDTTMSLATTSTFTARYDKACKHQ* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01618 390 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Rops7g01618 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Rops7g01618 390 CDD STKc_IRAK 52 319 - -
Rops7g01618 390 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01618 390 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Rops7g01618 390 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Rops7g01618 390 FunFam cold-responsive protein kinase 1 16 121 - -
Rops7g01618 390 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01618 390 ProSiteProfiles Protein kinase domain profile. 46 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01618 390 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Rops7g01618 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 360 - -
Rops7g01618 390 FunFam cold-responsive protein kinase 1 122 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01618 Rops-Chr7 24739717 24745077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01618 17 332 Receptor kinase-like Gene Family AT1G53430 53.943 7.36e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops7g01618 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01618 - - gmx:100782320 628.632