Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops7g01588 | ATGGCTGCGGTTGCTGACATTTCCGCTGATGCCAACAACATGGACTCAAAACCAAAGCCAGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAATTTTTTCCTTCATCATATTCTCCCAATCATGATCATCGCCATCAGGGCTATAATCTGCTCACACCCACCAATTTTCTGGTCAATACTAAGCCTTCAGCTAATGATAATTACCCAAACAATCGAAGGAGAAATAATTTTAACCAAGGGAGGAGAAGGTTGAATGGAAGATCACTAAAGGCTCAGCGAGAAGATAGCATTAGAAGAACTGTATATGTTTCTGATATTGATCAGCATGTTACTGAAGAGCGGCTTGCAGCCTTATTCAGCAGTTGTGGACAAGTGATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTTCGCTTTGCTTTTGTCGAGTTTGCTGATGACCATGGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTGCTTGGATTTTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCAATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGATGATGAACGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAACTTTTTTGAATCAGCTTGTGGCGAGGTTACACGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCATTGGCAGAAAGTGCCATTTGTGCACTAAATTGTAGTGGGATGCTCTTGGGAACCCAGCCTATCAGGATAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCAACATCACATTAA | 888 | 0.4313 | MAAVADISADANNMDSKPKPESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHRHQGYNLLTPTNFLVNTKPSANDNYPNNRRRNNFNQGRRRLNGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADDHGARAALNLGGTVLGFYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKVSQAEVKNFFESACGEVTRLRLLGDQVHSTRIAFVEFALAESAICALNCSGMLLGTQPIRISPSKTPVRPRVTRPTSH* | 296 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops7g01588 | 295 | SUPERFAMILY | RNA-binding domain, RBD | 51 | 183 | IPR035979 | GO:0003676 | |
| Rops7g01588 | 295 | Gene3D | - | 195 | 289 | IPR012677 | - | |
| Rops7g01588 | 295 | Gene3D | - | 70 | 186 | IPR012677 | - | |
| Rops7g01588 | 295 | MobiDBLite | consensus disorder prediction | 71 | 96 | - | - | |
| Rops7g01588 | 295 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 75 | 187 | - | - | |
| Rops7g01588 | 295 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 32 | 289 | - | - | |
| Rops7g01588 | 295 | MobiDBLite | consensus disorder prediction | 71 | 101 | - | - | |
| Rops7g01588 | 295 | CDD | RRM1_CID8_like | 108 | 187 | IPR034823 | - | |
| Rops7g01588 | 295 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 110 | 185 | IPR000504 | GO:0003723 | |
| Rops7g01588 | 295 | SMART | rrm1_1 | 208 | 279 | IPR000504 | GO:0003723 | |
| Rops7g01588 | 295 | SMART | rrm1_1 | 111 | 181 | IPR000504 | GO:0003723 | |
| Rops7g01588 | 295 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 201 | 279 | - | - | |
| Rops7g01588 | 295 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 283 | IPR000504 | GO:0003723 | |
| Rops7g01588 | 295 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 112 | 174 | IPR000504 | GO:0003723 | |
| Rops7g01588 | 295 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 209 | 276 | IPR000504 | GO:0003723 | |
| Rops7g01588 | 295 | Pfam | Ataxin-2 C-terminal region | 32 | 47 | IPR009818 | - | |
| Rops7g01588 | 295 | SUPERFAMILY | RNA-binding domain, RBD | 197 | 289 | IPR035979 | GO:0003676 | |
| Rops7g01588 | 295 | CDD | RRM2_CID8_like | 203 | 284 | IPR034825 | - | |
| Rops7g01588 | 295 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops7g01588 | Rops-Chr7 | 24043608 | 24050674 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops7g01588 | 107 | 264 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 27.329 | 2.72e-12 | 64.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops7g01588 | - | - | gmx:100779109 | 513.457 |