LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops7g01513	ATGCAGCAAGATCAGCTCAAGAAGGATATTAAGGAGTTAGAATTTTTCACTGAGTATGGGGATGCCAACAGATACAAAATTCTTGAAGTTATTGGGAAGGGTAGCTATGGAGTTGTTTGTGCAGCAATTGACACACACACTGGGGGGAAAGTTGCAATAAAGAAGATTCATGATGTTTTTGAACATATCTCTGATGCCATTAGAATCCTCCGGGAAGTCAAATTGCTAAGACTTTTGAGGCACCCTGATATTGTTGAGATTAAGCGGATCATGTTGCCACCTTCAAAGAGGGAGTTTAAAGATATATATGTAGTCTTTGAGCTCATGGAGTCTGATCTCCATCAAGTCATCAAAGCCAATGATGACTTAACCCGTGAACACCATCAATTTTTTCTTTATCAGATGCTACGTGCATTGAAGTATATGCATACAGCAAATGTATATCACAGAGACCTTAAGCCCAAGAATATACTGGCAAATGCAAATTGCAAACTCAAAGTTTGTGATTTTGGACTTGCAAGAGTTGCATTCAATGATGCCCCAACAACAATGTTTTGGACGGATTATGTTGCTACAAGATGGTATAGAGCCCCAGAACTATGTGGATCTTTCTTTTCGAAGGATAGGGTGATCCCCTGGAGGACTATTGATCTCTCCTGGAAGTTGAATTTATCTGTCCTTCAGTATACACCAGCAATTGATATATGGAGCATTGGATGCATTTTTGCAGAGGTGCTGACAGGAAAGCCATTGTTTCCTGGTAAAAGTATTGTGCATCAAATAGAATTGATTACTGATCTTCTTGGGACACCATCACCTGAAACTATAACAGGGGTTCGAAATGAGAAGGCAAGGAAGTACTTGATGGAAATGCGGAAGAAATCTCCTGTGCCATTTGAACAGAAATTTCCAAATGCTGATCCATTGGCACTTCGCCTACTGCAAAGACTTTTAGCATTTGATCCAAAAGATCGGCCAACTGCTCAAGAGGCACTAGCTGATCCTTTCTTTAAGGGTTTGGCCAAAGTTGAGAGAGAACCTTCTTGTCAGCCAATTTCAAGATTGGAATTTGAGTTTGAGAGAAGACGGCTAACAAAGGAGGATGTTAGGGAACTACTATATCGGGAAATACTGGAATATCATCCTCAGCTGCTTAAAGATTACATAAATGGAACTGACGGCACAAACTTCCTCTACCCTAGTGCAATAGATCAATTCAAAAAGCAATTTGCTTATCTTGAGGAAAATCATGGTAAAAGTGGCCCAGTGATTCCTCCAGAAAGGAAGCATGTCTCCCTTCCAAGGTCCACTGTTCACTCCAGTACAATTCCTCCTAGTACACAGCCATCTTTTGCTCCACGTGAGAACAAGCAAATCGCAGAAGAGGCGGCCAAGATTTCTAGAGCATCAGAATCAAATTATGGAAGTCAATCAAGGGGTTCACGACCTCCACCAAGGGCTCCAGCAGCCAAACCAGGTAGAGTCGTAGGGCCAGTTCACTATGACAATGGGAGAAACATAAAAGATACTTATGATCCAAGGATCTCCTACCGAAATACTCTTCCTCAATCAGTCTCTCCACACTGTTTCCATAATAGGGTGCACCCTTCTAACGCAAAAACTACATCAGAAACATATAAGGATACATCACAAGGCAAACATCAACTCCCATCTCAGCAGTTTAGTGTGCCAGCCAGACCACCTATTGATCTTAACACTAACCCATACTACCAGCAGGCTAAGAATAATCACCCTGTGACTGCAATTGATGCAAAACTGATGCAGGCACAATCTCAATTTGGTGCAGCTGGTGCTGCATCAGTAGCTGTTGCTGCTCACAGGCATTCAGGGGCATTTCAGTATGGATTGTCATAG	1875	0.4197	MQQDQLKKDIKELEFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGGKVAIKKIHDVFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTTMFWTDYVATRWYRAPELCGSFFSKDRVIPWRTIDLSWKLNLSVLQYTPAIDIWSIGCIFAEVLTGKPLFPGKSIVHQIELITDLLGTPSPETITGVRNEKARKYLMEMRKKSPVPFEQKFPNADPLALRLLQRLLAFDPKDRPTAQEALADPFFKGLAKVEREPSCQPISRLEFEFERRRLTKEDVRELLYREILEYHPQLLKDYINGTDGTNFLYPSAIDQFKKQFAYLEENHGKSGPVIPPERKHVSLPRSTVHSSTIPPSTQPSFAPRENKQIAEEAAKISRASESNYGSQSRGSRPPPRAPAAKPGRVVGPVHYDNGRNIKDTYDPRISYRNTLPQSVSPHCFHNRVHPSNAKTTSETYKDTSQGKHQLPSQQFSVPARPPIDLNTNPYYQQAKNNHPVTAIDAKLMQAQSQFGAAGAASVAVAAHRHSGAFQYGLS*	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops7g01513	624	ProSitePatterns	MAP kinase signature.	60	163	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Rops7g01513	624	MobiDBLite	consensus disorder prediction	417	562	-	-
	Rops7g01513	624	FunFam	Mitogen-activated protein kinase	111	360	-	-
	Rops7g01513	624	ProSiteProfiles	Protein kinase domain profile.	25	337	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops7g01513	624	Gene3D	Phosphorylase Kinase; domain 1	22	110	-	-
	Rops7g01513	624	Gene3D	Transferase(Phosphotransferase) domain 1	111	202	-	-
	Rops7g01513	624	ProSitePatterns	Protein kinases ATP-binding region signature.	31	55	IPR017441	GO:0005524
	Rops7g01513	624	SMART	serkin_6	25	337	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops7g01513	624	Pfam	Protein kinase domain	25	337	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops7g01513	624	FunFam	Mitogen-activated protein kinase	15	119	-	-
	Rops7g01513	624	SUPERFAMILY	Protein kinase-like (PK-like)	21	341	IPR011009	-
	Rops7g01513	624	MobiDBLite	consensus disorder prediction	516	562	-	-
	Rops7g01513	624	Gene3D	Phosphorylase Kinase; domain 1	361	383	-	-
	Rops7g01513	624	MobiDBLite	consensus disorder prediction	435	454	-	-
	Rops7g01513	624	Gene3D	Transferase(Phosphotransferase) domain 1	224	360	-	-
	Rops7g01513	624	CDD	STKc_TDY_MAPK	24	382	-	-
	Rops7g01513	624	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	24	384	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops7g01513	Rops-Chr7	22323966	22328827	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops7g01513	1	622	MAP Kinase Gene Family	AT1G53510	67.901	0.0	822

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Rops7g01513		Pkinase	1.1e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops7g01513	-		-	gmx:100800878	1028.08