Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01491 ATGAAGATTCAGTGTAACGTGTGTGGAGCTGCAGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCACTGTGTTGGGAATGTGATGAGAAGGTTCATGCAGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTTCTCTTTCTAGCTCTTCCTCTCATGTGCCTAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTTTTCTGTCTAGAGGATCGAGCTTTACTCTGCAGAAAATGTGATTTGGCAATACACACTGCAAATGCATATGTTTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACTGAGCCTGGTGCTTCCTCAACTTCTTTGAAGTCAGATTCTGGGGAGAAAATTTCTGATACAAAGTCTTCTTCTGTCTCTAGAAAGGTTTCCACAATGCCTCAGTCATCGGATTACAATGAAGTTTTACCCACTGAAGTTGGAGGAGTTGAGGAGTTTCCACCAGCTGAGGTGTCTTATGGTGGTGGTTCTACAGCTGGAAACATCTCACAGTGGACAATTGATGAATTTCTTAACATAAATGAATTCAGTCAGAGTTATAATTACATGGAAGGATCATCAAGGGCTGACAGTGGTAAGCTTGGGGATTCCGACTCTCCTGTCTTAAGATCCGATGAAGAGGAAATGGAGGATGATGAATACTTGGGACGCGATCCCGATTCATCCTGGACAGTTCCTCAAATCCCTTCCCCTCCTACAGCATCCGGGTTATACTGGCCTAAAGACCCTCAATATTCATTTGATAGTGCTGTGTCTGTTCCTGACATAAGCTTTTCTAGCATGCAACAGCCTCAGAATAGTAGTATTTTTTCAAGACGGTGGAGGCATCATTAA 879 0.438 MKIQCNVCGAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVSLSSSSSHVPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSTSLKSDSGEKISDTKSSSVSRKVSTMPQSSDYNEVLPTEVGGVEEFPPAEVSYGGGSTAGNISQWTIDEFLNINEFSQSYNYMEGSSRADSGKLGDSDSPVLRSDEEEMEDDEYLGRDPDSSWTVPQIPSPPTASGLYWPKDPQYSFDSAVSVPDISFSSMQQPQNSSIFSRRWRHH* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01491 292 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Rops7g01491 292 MobiDBLite consensus disorder prediction 110 149 - -
Rops7g01491 292 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Rops7g01491 292 SMART bboxneu5 52 99 IPR000315 GO:0008270
Rops7g01491 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Rops7g01491 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
Rops7g01491 292 MobiDBLite consensus disorder prediction 200 254 - -
Rops7g01491 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops7g01491 292 CDD Bbox1_BBX-like 5 45 - -
Rops7g01491 292 FunFam B-box zinc finger protein 22 1 93 - -
Rops7g01491 292 CDD Bbox1_BBX-like 56 99 - -
Rops7g01491 292 MobiDBLite consensus disorder prediction 273 292 - -
Rops7g01491 292 Gene3D Classic Zinc Finger 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01491 Rops-Chr7 22014950 22017673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01491 1 290 C2C2-CO-like Transcription Factor Family AT1G78600 47.112 3.24e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops7g01491 zf-B_box 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01491 - - gmx:100790959 479.559