Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01478 ATGGCACAAATTCTGCTACATGGGACCGTTCATGCCACAATCTATGAGGTTGATAGACTCAAGACTGCTGGTGGCAATATTTTCACCAAGAATCTCTTATCTGTTAGACCAAATTCATTCTTTTCAACAGAAGATCTGGTTTTCAAGTGTTTCTGTGGTCTCTGGCTTTCTGACTTTCAGAGTCTTCTCAAAACTCTGGAACTAAGGAATCTTCTGAATGACAGATGGGTTGAAATATTGGATGAGAATAAAACACCAATACATGGACATTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTTTCAAAGGACCGAAACTGGGGTCTTGGCATTAGAAGTCCTAAATTTCCTGGACTTCCTTATACTTTCTGTTCACAGAGACAAGGATGTAAGGTTTCTCTGTACCAAGATGCTCATGTCCCAGACAATTTTGTCCCTAAAATACCACTTGCTGGAGGCCAGACTTACCAGCCTCATAGATGTTGGGAGGATGTTTTTGATGCAATTAATAATGCAAAGCACTTAATATACATTACAGGCTGGTCTGTTTATACCAATATTACCTTGGTAAGGAATTCTAGGAGGCCAAAGCCTGGAGGAGACTCAACACTTGGTGAGCTTCTCAAGAAAAAAGCAAAGGAAGGTGTCAGGGTTTTAATGCTTGTTTGGGATGATAGAACATCAATTGGTTGGGTAAAGAAACATGGTTATATGGCTACTAATGATCAAGAAACCGAGGAGTACTTCCATGGCAGTGAAGTGCATTGTGTTTTATGCCCTCAAAATGCTGATGATGGTGGAAGTGTTATTCAGGACATAGAAATTGCCACCATGTTTACTCATCACCAGAAAATTGTGGTGGTGGACAGTGAGTTGCCAAGTGGAGGGTCATATAAGAGAAGAATTGTGAGTTTTGTAGGGGGTATTGATCTCTGTGATGGAAGATATGATACTCAATTCCATTCATTTTTCAAAACCCTGGACACAGCCCATCATGATGATTTTCATCAGATTAACTTTCCTGGTGCTTCAATTAAAAAAGGTGGTCCAAGGGAACCTTGGCATGACGTCCACTCTAGGCTTGAAGGGCCCGTTGCTTGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAGCAGGGTAAAAAGGACTTGCTTGTTGGACTGAGAGACCTTGAAGATGTCATTATTCCACCATCCCCAATAACTTTCCCTGATGAACATGAGACATGGAATGTTCAGGTATTTAGATCAATGGATGGTGGAGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGATGCTGCTAGAGCTGGACTTATTAGTGGGAAGGATAATACAATAGATCGTAGTATTCAAGATGCTTATATCAATGCTATTAGACGAGCAAAGAATTTCATCTATATTGAAAATCAGTATTTCCTAGGAAGCAGTTATGCATGGAGTGCTGATGGTATTACACCTGAAGACATTGGTGCTTTGCATCAATCCCAAGGGAGCTTTCACTTAAGATTGCATCAATGCCTTGGCAATCGAGAGGTGAAGAAACAAGGGGAGTATGAGCCTTCTGAAAGACCAGAACCTGATACAGATTATATGAGAGCCCAAGAGGCTCGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGATCTGCCAACATTAACCAGAGATCAATGGATGGTGCTAGAGACACTGAGATTGCAATGGGTGCTTATCAACCCTACCATTTGGCTACAAGGCAGCCAGCAAGGGGTCAGATCCATGGTTTCCGCATGTCATTGTGGTATGAACACCTTGGCATGCTTAATGACTCTTTCCTCCTCCCTGAAAGTGAAGAATGTATTAAGAAGGTGAACCAGATTGCTGACAAGTACTGGGATCTCTATTCTCAAGAATCACTTGAGCATGACCTTCCAGGCCACTTGCTACGCTATCTTGTTGGGATTTCCAGCCAAGGAAAAGTCACGGAGCTACCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGTGTTCTTGGCGAAAAAGATGACTTTATTCCACCAATCCTTACTACTTAG 2088 0.4181 MAQILLHGTVHATIYEVDRLKTAGGNIFTKNLLSVRPNSFFSTEDLVFKCFCGLWLSDFQSLLKTLELRNLLNDRWVEILDENKTPIHGHSKIHVKLQYFDVSKDRNWGLGIRSPKFPGLPYTFCSQRQGCKVSLYQDAHVPDNFVPKIPLAGGQTYQPHRCWEDVFDAINNAKHLIYITGWSVYTNITLVRNSRRPKPGGDSTLGELLKKKAKEGVRVLMLVWDDRTSIGWVKKHGYMATNDQETEEYFHGSEVHCVLCPQNADDGGSVIQDIEIATMFTHHQKIVVVDSELPSGGSYKRRIVSFVGGIDLCDGRYDTQFHSFFKTLDTAHHDDFHQINFPGASIKKGGPREPWHDVHSRLEGPVAWDVLFNFEQRWRKQGKKDLLVGLRDLEDVIIPPSPITFPDEHETWNVQVFRSMDGGAAFGFPETPEDAARAGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYAWSADGITPEDIGALHQSQGSFHLRLHQCLGNREVKKQGEYEPSERPEPDTDYMRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLNDSFLLPESEECIKKVNQIADKYWDLYSQESLEHDLPGHLLRYLVGISSQGKVTELPGFEFFPDTKARVLGEKDDFIPPILTT* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01478 695 SMART pld_4 278 316 IPR001736 GO:0003824
Rops7g01478 695 SMART pld_4 541 568 IPR001736 GO:0003824
Rops7g01478 695 FunFam Phospholipase D delta 153 396 - -
Rops7g01478 695 SUPERFAMILY Phospholipase D/nuclease 104 388 - -
Rops7g01478 695 PIRSF PLD_plant 66 497 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops7g01478 695 PIRSF PLD_plant 494 695 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops7g01478 695 PIRSF PLD_plant 1 44 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops7g01478 695 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 541 568 IPR001736 GO:0003824
Rops7g01478 695 Gene3D Endonuclease Chain A 152 391 - -
Rops7g01478 695 Pfam Phospholipase D C terminal 614 685 IPR024632 -
Rops7g01478 695 SUPERFAMILY Phospholipase D/nuclease 404 625 - -
Rops7g01478 695 PANTHER PHOSPHOLIPASE D 73 493 IPR015679 -
Rops7g01478 695 Gene3D Endonuclease Chain A 446 586 - -
Rops7g01478 695 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 278 316 IPR001736 GO:0003824
Rops7g01478 695 Pfam Phospholipase D Active site motif 278 316 IPR001736 GO:0003824
Rops7g01478 695 Pfam Phospholipase D Active site motif 542 568 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01478 Rops-Chr7 21523174 21527754 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01478 508 695 Phospholipase D Gene Family (Wang group) AT3G15730 82.447 5.16e-107 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01478 K01115 - gmx:100784434 800.431