Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01477 ATGGTGCAATCAAAGAAGTTCAGAGGAGTCAGGCAACGCCATTGGGGCTCTTGGGTTTCTGAGATTCGTCACCCCTTATTGTATTTACATCAAACCAACTCATCCTTTTATTTTATTGTTTCTTTATCTTCTGCAGATACTTTAGAAAAGTATTGGAAAAGGAGGGTGTGGCCTGGAACATTTGATACTGCTGAAGAAGCAGCTAGAGCATATGATGAGGCAAAGCGAGCAGGGCCTCGTTCTGAATCAAACTTGATTATGATGGTTGAATTGGAAAGGAAGAATAATGGAGCTTCTGATTCAGAAATGTCAGTGGCAGACACACCAGAGAAGGTAAAACCAAAAGAAATCAACAATGGTTTAGATGAAGAACAGAGGATTGCGTTGCAGATGATTGAAGAACTTCTGAATAGGAATTAA 420 0.4 MVQSKKFRGVRQRHWGSWVSEIRHPLLYLHQTNSSFYFIVSLSSADTLEKYWKRRVWPGTFDTAEEAARAYDEAKRAGPRSESNLIMMVELERKNNGASDSEMSVADTPEKVKPKEINNGLDEEQRIALQMIEELLNRN* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01477 139 SMART rav1_2 6 92 IPR001471 GO:0003700|GO:0006355
Rops7g01477 139 Gene3D AP2/ERF domain 5 85 IPR036955 GO:0003700|GO:0006355
Rops7g01477 139 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 107 - -
Rops7g01477 139 Pfam AP2 domain 6 76 IPR001471 GO:0003700|GO:0006355
Rops7g01477 139 MobiDBLite consensus disorder prediction 95 119 - -
Rops7g01477 139 CDD AP2 5 74 IPR001471 GO:0003700|GO:0006355
Rops7g01477 139 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Rops7g01477 139 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Rops7g01477 139 SUPERFAMILY DNA-binding domain 51 76 IPR016177 GO:0003677
Rops7g01477 139 ProSiteProfiles AP2/ERF domain profile. 6 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01477 Rops-Chr7 21510052 21510774 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01477 1 74 AP2-EREBP Transcription Factor Family AT1G15360 59.459 1.48e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops7g01477 AP2 1.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01477 - - nto:104089898 94.3597