Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01446 ATGCTCCTCTGTCCACCGATGGAGCCACGACGTTCTCTAGAGGTCTCGTTTCTCCCTCCGCCCTTAGATCAGAGCCCTCGCTCCCTTCATCAAACGCTTCCACCGCTACTCCTTTTGTGCAGGAAACAAGTTCACTGGATCCAATATGAAGGGAATGTGTTCAGATTCCCTGGTGGTGGAACCCAATTTCCTCAAGGTGCTGATAAATATATTGATCAACTTGCATCTGTGATTCCTATGGCCGATGGGACAGTGAGGACAACATTGGACACTGGTTGTGGGGTTGCAAGTTGGGGTGCATATCTTTGGAGCAGAAATGTTATTGCCATGTCATTTGCACCAAGGGACTCTCATGAAGCACAAGTACAATTTGCTCTTGAAAGGGGTGTACCTGCTGTTATTGGTGTTTTGGGAACCATAAAGTTGCCTTATCCATCTAGAGCCTTTGACATGGATCATTGTTCTCGTTGTTTGATTCCCTGGGGAGCAAATGATGGAATGTATATGATGGAAGTTGATAGAGTTCTAAGGCCAGGTGGTTATTGGGTGCTTTCGGGTCCTCCAATCAATTGGAAGGTTAACTACAGAGCCTGGCAGAGACCAAAGGAGGAACTCCAGGAAGAACAAAGAAAGATTGAAGAGGTTGCCGAGCAACTTTGCTGGGAGAAGGTGTCTGAGAAGGCTGAAATTGCCATTTTGCAAAAGACTACAGACTCCGAATCATGTCGTAGCAGACAAGATGAATCTAGTGTAGAATTTTGCAAATCCTCGGATGCTGATGATGTCTGGTATAAGAAAATGGAGGCCTGCATTACTCCCACTCCTAAAGATTATGGTGGGGATCTTAAACCATTTCCAAGCAGGCTATATATTAGTGAGGATGAGATTACATTTTTGACTGGAGGTGATGATCCTTATGATGATAATGTTGTTTTGAAGAAACTTTTTCATCCTAATCTCAAGCTCTTAATCGTTACTGAAGGGTCAGAGGGTTGTAGATATTACACGAAGGTACGCTTGGCAAAGCCATTTGACTATGATGTCACATGTCTCATTGGAAATCTTCCTCTCTCATTTCATCTTTGCCTTGTTTTGAACAGGGGCAGGGTTGGAGGTGTTAAAGTTAAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATTCTATACAGTATAGCTTCTGATCCAAGTATTTTTCAGGTATTGATTATCAGTGAAATTATGAAATATGGTATCAATTTATATCTTGTGTTTGAATACATGGTGCATGATTTGGCTGGACTTGCTACAAACCCTGCCATTACATTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTATTTTCTGGGCTGGAACATTGTCACAACCGTCATGTGCTGCATTGTGATATAAAGGAGTCAAACCTTCTTATTGACAATGATGGAATTCTTAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCAATGATCAGTAGAGTGGTGACTTTATGGTATCGACCTCCAGAAGTTCTTCTAGGGGCCACTGAATATGGTGTAGGAGTGGACCTCTGGAGTGCTGGTTGCATTCTTGCTTAA 1608 0.4291 MLLCPPMEPRRSLEVSFLPPPLDQSPRSLHQTLPPLLLLCRKQVHWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPMADGTVRTTLDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMDHCSRCLIPWGANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYRAWQRPKEELQEEQRKIEEVAEQLCWEKVSEKAEIAILQKTTDSESCRSRQDESSVEFCKSSDADDVWYKKMEACITPTPKDYGGDLKPFPSRLYISEDEITFLTGGDDPYDDNVVLKKLFHPNLKLLIVTEGSEGCRYYTKVRLAKPFDYDVTCLIGNLPLSFHLCLVLNRGRVGGVKVKPVDTTGAGDAFVSGILYSIASDPSIFQVLIISEIMKYGINLYLVFEYMVHDLAGLATNPAITFTEPQVKCYMHQLFSGLEHCHNRHVLHCDIKESNLLIDNDGILKIADFGLASFFDPDHKHPMISRVVTLWYRPPEVLLGATEYGVGVDLWSAGCILA* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01446 535 Coils Coil 202 222 - -
Rops7g01446 535 Gene3D Vaccinia Virus protein VP39 68 246 IPR029063 -
Rops7g01446 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Rops7g01446 535 FunFam probable methyltransferase PMT2 41 238 - -
Rops7g01446 535 SUPERFAMILY Ribokinase-like 280 406 IPR029056 -
Rops7g01446 535 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 210 IPR029063 -
Rops7g01446 535 SMART serkin_6 359 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01446 535 ProSiteProfiles Protein kinase domain profile. 319 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01446 535 Pfam Protein kinase domain 407 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01446 535 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 41 294 IPR004159 GO:0008168
Rops7g01446 535 Pfam pfkB family carbohydrate kinase 374 398 IPR011611 -
Rops7g01446 535 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 42 296 IPR004159 GO:0008168
Rops7g01446 535 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 379 392 IPR002173 GO:0016301
Rops7g01446 535 SUPERFAMILY Protein kinase-like (PK-like) 412 535 IPR011009 -
Rops7g01446 535 Gene3D Transferase(Phosphotransferase) domain 1 426 535 - -
Rops7g01446 535 Gene3D - 269 415 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01446 Rops-Chr7 20710963 20714443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01446 412 535 Core Cell Cycle Gene Families AT5G64960 62.097 1.75e-47 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops7g01446 Methyltransf_29 5.2e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01446 - - gmx:100792999 461.07