LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops7g01431	ATGAGCAGAGCCCTTAAAGCACAAAATCTTCAAGGCAGGCTCCCACCAGAACTGATCAGGCTGCCATATCTCCAAGAAATTGACCTTACCTGCAACTACCTTAATGGTACAATTCCTAAAGAATGGGGCTCCATGAAGAATCTTTTTAACATTACTCTGCTTGGAAACCGACTAACTGGTCCAATCCCAACAGAGCTGGCAGACCTCAACAATCTCAAATTTTTGATCCTTGAGTTCAACCAATTCTCTGGAAATCTTCCTCCACAACTTGGGAATCTTGTCCACATTGAAAAACTGCATCTAAGTTCCAACAACTTTACTGGAAAATTGCCTGAAACACTAGCAAGGCTTACTACAATCAAGGAATTCCGAATCAGTGACAATCAATTCTCTGGAAGCATACCCGATTTTATTCAAAGATGGATAAGTCTTGAACAATTAGCAATTCAAGGGAGTGGTTTAAGTGGACCAATTCCTTCTGGAATTTCATTTCTGCATGGCTTAACCGACTTGAGGATTAGTGACTTGAATGGCCCTGATTCTACTTTTCCACGAATTGATAATATGACTGAACTGAAAACATTGATACTAAGGAGTTGCAATATTAACGACACAATTTCAAATTATCTTGCAAACTTAACAAATTTGCAACTCTTAGACCTCAGCTTTAACAAAATAAGTGGAGACATTCCAAGAAACCTTGAGAGGTTTATAGGAGCAACCTTCATATATTTAACAGGAAACTTTCTCACTGGACAAGTGCCCGAGTGGACAAAGAAGCCTCAGAAATACTTAGATCTTTCATATAACAACTTCAGTGTCCCAGAGCCAGAGTCATGTTCTGAGCCAAATGAGAACTTGTTTGCCAGCTTCTCAAGGAATAACTCAGGACCACTTTCTTGTGAGAGGAACACTACAATATGTACCAAAACCATTAAATCTCTACATATAAATTGTGGTGGAAAACAGACTATCATTGGAGGTATAACATATGATAAAGATATAGATCCAGCAGAACCAGCAGTGTATAGACAGAGTGGTGACAACTGGGCATTTAGCAATACTGGTCACTTCTTGGATAATAATACCATAAAAATGCGGCTCCCATATACCACAGAGAATGAAACTAGGCTTTATATGACTGATATTGAATTATATAAGAATGCACGTATTTCCCCCTTGTCTTTGACTTATTATGGATTTTGCTTGGAAAATGGAGACTACACAGTAAAGCTCCACTTTGCTGAGATAATGTTTACTGATGATGACACATATGGCAGCCTAGGTAGACGTCTATTTGATGTCTACATTCAGGGAAAGTGTGTACTGAAGGATTTCAATATTGCAAATGAAGCACAAGGAGTTGGCAAGGAAAGTATAAAACAATTTCCTGCTCACGTGAGTAGTAATGATTTAGAGATCCGCTTCTATTGGGCTGGCAGAGGGACAACATATATCCCATATAAATCAGTAAATGGTCCTCTTATATCAGCTATATCTGTCACATATGACTCTGCACGTGGCATCTCTGTTGGGGCAGTTGTTGCAATTGTGGCTGCAGCAGTGATTTTTGTCATTTTGATTGCTGTTGGCATACTTTGGAGGGGAGGCTGTCTAGGAAAAAAACATTTATTAGTAAGAGAGCTAAAGGGTGTAGACCTGCAAACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCAACAAACAACTTTGATATTGCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGATGTTTGTCAGATGGAACATTAATTGCAGTCAAGCAGCTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAAATAGGCATGATTTCTGCTTTGCAGCACCCAAATCTTGTTAAACTCAAAGGATGTTGTGTGGAGGGAGATCAACTATTGTTGATATATGAATATATGGAAAACAACAGCCTTGCTCGTGCTTTATTTGGCCCCGAAGAAAACCAAATAAAATTGGATTGGTCAACAAGACAAATGATTTGTGTTGGTATTGCTAGAGGTTTAGCATACCTCCATGAAGAATCAAGACTGAAGATTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGATCTCAACCCAAAGATATCGGACTTTGGTTTGGCCAAGCTTAATGAAGAGGACAACACCCATATCAGTACCCGAATAGCTGGGACTTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACCGACAAAGCCGATGTCTATAGTTTTGGAATTGTTGCCTTGGAAATTATTAGTGGAATGAGCAACACCATTCACCGGCCAAAGGGTGAAGCTTTATATATTCTTAATAGGGCACATCTGTTAAAAGAGAAAGGAAATCTGATGGAGCTAGTTGATCTAAGGTTGAGTTCTGATTTCAATGAAGAGGAGGCAATGGTGATGGTCAACGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGACCCTCCATGTCATCAGTGGTAAGCATGCTTGAAGGTAGAACTGTGGTTCCAAAGTTTGTTTCAGATCCAAGTGAAGAAATGGATGAGATTAAGATGGAGGAAATGCAACAGTATTACCATCAAATAGATGAAAATAAGATAAGTGAGACACAAACTCAAAGTCAGAGTTTATTAATTGATGGGAAATGGACTGCTTCATCTTCATCAGCTGTAGACCTCTATCCCATCAACCTTGATTCTTCTTCCTATTGGGAGAAAAGAAATTAA	2763	0.3902	MSRALKAQNLQGRLPPELIRLPYLQEIDLTCNYLNGTIPKEWGSMKNLFNITLLGNRLTGPIPTELADLNNLKFLILEFNQFSGNLPPQLGNLVHIEKLHLSSNNFTGKLPETLARLTTIKEFRISDNQFSGSIPDFIQRWISLEQLAIQGSGLSGPIPSGISFLHGLTDLRISDLNGPDSTFPRIDNMTELKTLILRSCNINDTISNYLANLTNLQLLDLSFNKISGDIPRNLERFIGATFIYLTGNFLTGQVPEWTKKPQKYLDLSYNNFSVPEPESCSEPNENLFASFSRNNSGPLSCERNTTICTKTIKSLHINCGGKQTIIGGITYDKDIDPAEPAVYRQSGDNWAFSNTGHFLDNNTIKMRLPYTTENETRLYMTDIELYKNARISPLSLTYYGFCLENGDYTVKLHFAEIMFTDDDTYGSLGRRLFDVYIQGKCVLKDFNIANEAQGVGKESIKQFPAHVSSNDLEIRFYWAGRGTTYIPYKSVNGPLISAISVTYDSARGISVGAVVAIVAAAVIFVILIAVGILWRGGCLGKKHLLVRELKGVDLQTGLFTLRQIKAATNNFDIANKIGEGGFGPVYKGCLSDGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPNLVKLKGCCVEGDQLLLIYEYMENNSLARALFGPEENQIKLDWSTRQMICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLNEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIISGMSNTIHRPKGEALYILNRAHLLKEKGNLMELVDLRLSSDFNEEEAMVMVNVALLCTNVTSNLRPSMSSVVSMLEGRTVVPKFVSDPSEEMDEIKMEEMQQYYHQIDENKISETQTQSQSLLIDGKWTASSSSAVDLYPINLDSSSYWEKRN*	921

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops7g01431	920	CDD	STKc_IRAK	577	844	-	-
	Rops7g01431	920	SMART	serkin_6	571	842	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops7g01431	920	SUPERFAMILY	L domain-like	9	273	-	-
	Rops7g01431	920	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	5	880	-	-
	Rops7g01431	920	ProSiteProfiles	Protein kinase domain profile.	571	851	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops7g01431	920	Gene3D	Ribonuclease Inhibitor	3	146	IPR032675	-
	Rops7g01431	920	Gene3D	Phosphorylase Kinase; domain 1	541	646	-	-
	Rops7g01431	920	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	540	646	-	-
	Rops7g01431	920	Gene3D	Transferase(Phosphotransferase) domain 1	647	854	-	-
	Rops7g01431	920	Pfam	Protein tyrosine and serine/threonine kinase	573	841	IPR001245	GO:0004672\|GO:0006468
	Rops7g01431	920	FunFam	Leucine-rich repeat receptor protein kinase EMS1	14	101	-	-
	Rops7g01431	920	FunFam	Leucine-rich repeat transmembrane protein kinase	113	314	-	-
	Rops7g01431	920	Pfam	Malectin domain	314	499	IPR021720	-
	Rops7g01431	920	Gene3D	Ribonuclease Inhibitor	147	316	IPR032675	-
	Rops7g01431	920	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	693	705	IPR008271	GO:0004672\|GO:0006468
	Rops7g01431	920	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	312	504	-	-
	Rops7g01431	920	SUPERFAMILY	Protein kinase-like (PK-like)	554	856	IPR011009	-
	Rops7g01431	920	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	647	854	-	-
	Rops7g01431	920	Gene3D	-	317	505	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops7g01431	Rops-Chr7	20430611	20446466	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops7g01431	1	876	Receptor kinase-like Gene Family	AT1G53420	57.095	0.0	992

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops7g01431		PK_Tyr_Ser-Thr	1.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops7g01431	-		-	gmx:100791136	1262.28