Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01398 ATGAAGAGGAACAGTTTGAGCACCACTAGCTTGAAAGGTTACACTCAAAGTAATTTCACCACCAACAACAGCACCCCAATAAAAGAGTCCAGCTATGCCAACAAGAACCAAATGGCAAAAGAATTTTGGAACTGCAATGGATCAGAGGACTACATGAATGGCTTCCCATGGCCACCAAGATCATATACTTGTAGCTTTTGCAGGAAAGAATTCAAGTCTGCTCAAGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGCTGAGGCAGTCTTCTCCAACTGATACTCAAGGTCCTATGTTGAACCTTAACCCTATCACTAACCCTAACAACTCAACCTCTTCTTTGTCCTTATTACCATCATCATCATCATCTTCCTCTTCTTCAAATCTCAAGCGTATCCCTTGCACATTACCCTTGTTTGTTTCTCCTGCTCCTCCTTCATCTTCTGCCTCACCTTCTGAGTTGAATAGATGGGTTGTTGTGGATGGTATCTTACTGAACCCTTTGAGCACTAAGACCTCAGAGCCCACAAACTCCAAGTTTTATGGGGTTGGAGAATATGATGCTTTTGCAACTGAAGATGGGTGTAAAATCTTGAAGAAGGCTGAGATCCTCAGGATGAACTTGGAGATAGGTTTGCCTAAAGATTATGATTTAGATCTGGAGCTTCGTTTAGGTTCTTACTCTTAG 702 0.4245 MKRNSLSTTSLKGYTQSNFTTNNSTPIKESSYANKNQMAKEFWNCNGSEDYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPTDTQGPMLNLNPITNPNNSTSSLSLLPSSSSSSSSSNLKRIPCTLPLFVSPAPPSSSASPSELNRWVVVDGILLNPLSTKTSEPTNSKFYGVGEYDAFATEDGCKILKKAEILRMNLEIGLPKDYDLDLELRLGSYS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01398 233 MobiDBLite consensus disorder prediction 94 133 - -
Rops7g01398 233 Pfam C2H2-type zinc finger 62 86 - -
Rops7g01398 233 PANTHER OS07G0101800 PROTEIN 39 231 - -
Rops7g01398 233 SUPERFAMILY beta-beta-alpha zinc fingers 59 88 IPR036236 -
Rops7g01398 233 SMART c2h2final6 62 84 IPR013087 -
Rops7g01398 233 MobiDBLite consensus disorder prediction 1 28 - -
Rops7g01398 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Rops7g01398 233 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Rops7g01398 233 Gene3D Classic Zinc Finger 58 104 - -
Rops7g01398 233 MobiDBLite consensus disorder prediction 79 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01398 Rops-Chr7 19454534 19455235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01398 41 230 C2H2 Transcription Factor Family AT3G23130 43.147 8.71e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g01398 zf-C2H2_6 1.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01398 - - var:108333719 231.491