Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01396 ATGTCGTTGATGAAGGTCTTTCGCTCTCGCAAATTCTCCAGATCATTTAAGGAGGTTCGGGCTATTGATGGCGACGGTGACCGACATGACGCCGCCGGCGACGACGGCAATGCGTGGTCGACGATGTTGCCGGAGCTTCTCGGAGAGATCATAAGAAGGGTGGATTCCGCCGAGGATCAGTGGCCGCATCGCCAAAACGTCGTCGCTTGTGCCTGCGTTTGCAAGCGGTGGAGAGATATGACGCGTGAGATCGTACGGTCACCTTCGCATAATGGCAAAATCACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGACCTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTACCTCTATCTTGCTCTTACATCATCATTCACAGACAAAGGGAAGTTTCTGTTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATGTAATATCACTGGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGGAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCCAAACCATCAAGTGGTAGGGCAAGCCGTCGTTTCGCCAGCAAGCAGATAAGCCCTCAAGTACCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGGATGGTTTGCTCACTGAAGTCTCCGGTCTCAGCAACGGGTGAAAGTTCAGATAGCATGTCTCTTGATGACCATAAAATGCATAGTAAAGAACATGCTGCTTCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGTCGTGTTACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAAGAAACAGTTCTCCTCCAATTTGGTAAAGTAGGGGACGATACTTTTACCATGGATTTTAGGCAGCCCTTATCTGCGTTCCAGGCATTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1107 0.4815 MSLMKVFRSRKFSRSFKEVRAIDGDGDRHDAAGDDGNAWSTMLPELLGEIIRRVDSAEDQWPHRQNVVACACVCKRWRDMTREIVRSPSHNGKITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTSSFTDKGKFLLAARRYRCGTHTEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVSATGESSDSMSLDDHKMHSKEHAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDFRQPLSAFQAFAICLTSFGTKLACE* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01396 368 Gene3D Tubby Protein; Chain A 95 368 IPR025659 -
Rops7g01396 368 Pfam F-box domain 44 86 IPR001810 GO:0005515
Rops7g01396 368 PRINTS Tubby superfamily signature 154 170 IPR000007 -
Rops7g01396 368 PRINTS Tubby superfamily signature 170 194 IPR000007 -
Rops7g01396 368 PRINTS Tubby superfamily signature 325 344 IPR000007 -
Rops7g01396 368 PRINTS Tubby superfamily signature 278 295 IPR000007 -
Rops7g01396 368 PRINTS Tubby superfamily signature 346 368 IPR000007 -
Rops7g01396 368 PRINTS Tubby superfamily signature 296 312 IPR000007 -
Rops7g01396 368 PRINTS Tubby superfamily signature 219 246 IPR000007 -
Rops7g01396 368 CDD F-box_AtTLP-like 39 83 - -
Rops7g01396 368 ProSitePatterns Tub family signature 2. 353 368 IPR018066 -
Rops7g01396 368 SUPERFAMILY Tubby C-terminal domain-like 88 368 IPR025659 -
Rops7g01396 368 ProSitePatterns Tub family signature 1. 296 309 IPR018066 -
Rops7g01396 368 Pfam Tub family 100 363 IPR000007 -
Rops7g01396 368 PANTHER TUBBY-RELATED 37 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01396 Rops-Chr7 19429457 19434093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01396 1 368 TUB Transcription Factor Family AT1G53320 72.296 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops7g01396 Tub 4.8e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01396 K19600 - gmx:100808096 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01396 7 19429457 19434093 Rops7g01396 7 19429457 19434093 ECH