Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01393 ATGTTGAAACAGGCAGCAGGGGCATGTTGGTACTTGCTGGGGATCCAAAGGGCAGCCAAGTGCTTGGAAGAGCAATGTGGGAAAACAGCAGGCTGTGGCCTAAGAACGCTGTGTTGCAAAGAACCTATATACTATGGTACCACTAGCATGGTGAAAGAGAAAGCAAGGTTGGCATGGGCAGGGAACAGGGAAGCAAGGTCTACATGCTTAGGTAGTGCTGAAAACTATGACTATGGAGCTTATAAATGGACTGTTCAACTTGTAACAAATGATAGCAGATTGGAAAAGATACTCTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGTAACTTGGAGAGCACAACAGAACGGCTAGAAGTGATTTTCAACATTATTGTTTTGACTAGCGGACTCCTTCTAGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTACATGCTACAACATCAAAGAAGCAAGCAATGCAATTAAAGATGAGGAATATAGAATGGTGGATGAGCAAAAGGAGGTTGCCACAAGGGCTAAGGCATCGTGTTCGTAACTATGAGAGGCAACGTTGGGCTGCCATGCGTGGGGTTGATGAATGCCAAATGATCAAAAACTTACCTGAAGGGTTGAGAAGGGACATCAAGTACCATCTCGGTTTGGATTTGGTGAGACAGGTGCCACTATTTCAGCATATGGATGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAGGGAGAAACAATAACAAGAGAGGGAGACCCAGTTAAAAGAATGATATTTGTGGTAAGGGGTCATCTTCAAAGCAGCCAAGTCCTAAGAGATGGGGTGAAAAGTTACTGCATGTTAGGCCCTGGGAACTTCAGTGGAGATGAGCTACTTTCGTGGTGTTTGAGAAGGCCATTTATAGAGCGACTTCCACCATCAACATCCACTTTGGTCACACTTGAAACCACTGAGGCATTTGGGCTTGAAGCTGAGGATGTGAAGTATGTGACACAACATTTTAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCAAGGTATTACTCACCTGGATGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCTTGGAGGAGGTATAAGCACCGTTTGACTTTGACATCTTTGTCCTTTATAAGGCCTCGAAGGCCTGTGTCAAGGTCCACTTCCTTGGAAGAGGACAGGCTTCGTCTCTATACAGCTTTGCTAACCTCACCAAAGCCTAATCAGGATGATTTGGAATTTTCCTAA 1278 0.4444 MLKQAAGACWYLLGIQRAAKCLEEQCGKTAGCGLRTLCCKEPIYYGTTSMVKEKARLAWAGNREARSTCLGSAENYDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRRLPQGLRHRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLGLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVKRMIFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSTSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRSTSLEEDRLRLYTALLTSPKPNQDDLEFS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01393 425 Gene3D Jelly Rolls 225 343 IPR014710 -
Rops7g01393 425 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 389 - -
Rops7g01393 425 SUPERFAMILY cAMP-binding domain-like 153 341 IPR018490 -
Rops7g01393 425 FunFam cyclic nucleotide-gated ion channel 4 225 343 - -
Rops7g01393 425 FunFam Cyclic nucleotide-gated ion channel 1 154 218 - -
Rops7g01393 425 CDD CAP_ED 227 333 IPR000595 -
Rops7g01393 425 ProSiteProfiles cAMP/cGMP binding motif profile. 227 337 IPR000595 -
Rops7g01393 425 Gene3D Helix hairpin bin 152 217 - -
Rops7g01393 425 Pfam Cyclic nucleotide-binding domain 247 335 IPR000595 -
Rops7g01393 425 SMART cnmp_10 227 356 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01393 Rops-Chr7 19343000 19347130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01393 4 423 Ion Channels AT5G54250 84.524 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01393 K05391 - gmx:100800795 778.474