Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01384 ATGAACGAGAAGGCCCACGTTACCAAGGAGCTCAACGCCAAGCACAAAAAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCCGACTGCAAAGCTAAAGCTCCCAGATGGGCTAGTGTAAATCTTGGTATCTTTATATGCATGCAGTGTTCAGGGATACATCGAAGCTTGGGGGTACATATATCAAAGGTCCGTTCTGCAACTCTGGACACCTGGCTTCCAGAGCAAGTTGCATTCATTCATTCGATGGGAAATGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTACGATAGAGTTGGAATTGAAAATTTCATTCGAGCAAAGTACGAAGAGAAGAGATGGGTTCCAAGGGATGGGAATCCGAAAACACCTTCTGGATTGCGGGAACAGAAAACTCCTTCCCATTTGCAGAGGCCTGTGGAAAGAAGCGGGTATGGTCATGCCACTGTTTCTGAGAATAATTTCGAGGAAAGGAAGAAAATCCAACCATCAAATGCAGTTCCTGCTACAAGAATAACTGTTTCTGCTCCTCCTAAAGCACCTGAGCAGGTAACTCCTGTTGCCAAACCTCGGCATGTTGAGAAAGTGGAACCAGTAGAACCACAAACACAAGCTGAAACTTCAAAGCAGGCTACAGATATAGCTCAAAACACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGGCCCAAGTGAACATGGCTCTGAGGCAGCTGGTGCTACTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGTTGCAGAGGTGTCAACATCTGAGAAGACTGGTCCACCAAAAGCAGTTGAGGGTACTCCCCCATCTGCATCTGGAATTGAGGATCTATTTAAAGATTCACCTTCTGTGATGCCAGGCCTAGCTCCAGCAAAACCGCAGAAAGATGTGAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAGCAGCAGCTTGCCATGCTAGCACAGCAACAGTCTCTCCTAATGGCTGCTGCAGCTAAATCTACTGGTGGGGATCCCAAGTATCCTGCTAACATGCAACAACCTAGGCCCAATGTTCCTGTCCAAAATTGGCCGGCTAATGGATACCAGATTTCTGGAGTAATGCCTATGGGTGGTCAAGGAGAGCTACAGAAACTTTCACAGGGTCAGACTAGGAACATGACTCCGGCACATCCAGCAGGTAGCACTGTTCAATATCCACCATCGGGTTACTATACTATGGGGCAAGTTGGTCCAGTCAATGGTTCGTGCTTCTTTGATCCTCCTCGCGATTCGCTCTATTGTCTTCTACGATTTTCAGGAATCCACCGCACTCTAGATTTTGAGAAAGCAATTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATATTGCACTTCCTGGGAGTTGAAGGACCAAAAACATCAGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCAACTGTTAGGGCCAGTGCTGTGAGCACGCTGGCACAGTTTGGTGCTGCAGTTGATGCATTAAAGCCCCGCATATTTGTGCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTCAATTTCTCTGTCATATCTTACAAATTACAATGCATCTCTATAATTATGTGGTTTATGAGATCATACAATTTTGCTACTCTGGAAGAACGTAAAGCTGTTACTTTAATTTATATTTGGATGTTTCTATTTCTTTTCAGGAATGCATGGGAAAGCATGGGGCCTGATTGTGAGCGAGTGGATGAATATGGTCTTGGCCCAAGGGAAAGCTTGGCTGAAGCTGTAAATGTTGTCATCAATCTTCTTGGCATGCAGCCTTGTGAGGTAAGCCAATGA 1998 0.4399 MNEKAHVTKELNAKHKKILEGLLKLPENRECADCKAKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNPKTPSGLREQKTPSHLQRPVERSGYGHATVSENNFEERKKIQPSNAVPATRITVSAPPKAPEQVTPVAKPRHVEKVEPVEPQTQAETSKQATDIAQNTPPKVDYATDLFNMLSMDGPSEHGSEAAGATADDNNWAGFQSVAEVSTSEKTGPPKAVEGTPPSASGIEDLFKDSPSVMPGLAPAKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSTGGDPKYPANMQQPRPNVPVQNWPANGYQISGVMPMGGQGELQKLSQGQTRNMTPAHPAGSTVQYPPSGYYTMGQVGPVNGSCFFDPPRDSLYCLLRFSGIHRTLDFEKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLAQFGAAVDALKPRIFVLLRRCLFDSDDEVNFSVISYKLQCISIIMWFMRSYNFATLEERKAVTLIYIWMFLFLFRNAWESMGPDCERVDEYGLGPRESLAEAVNVVINLLGMQPCEVSQ* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01384 665 CDD ArfGap 19 117 - -
Rops7g01384 665 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 620 665 IPR009028 GO:0006886|GO:0016192|GO:0030117
Rops7g01384 665 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Rops7g01384 665 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Rops7g01384 665 MobiDBLite consensus disorder prediction 272 292 - -
Rops7g01384 665 SUPERFAMILY ARM repeat 467 579 IPR016024 -
Rops7g01384 665 MobiDBLite consensus disorder prediction 185 221 - -
Rops7g01384 665 MobiDBLite consensus disorder prediction 123 153 - -
Rops7g01384 665 Pfam Adaptin N terminal region 465 575 IPR002553 GO:0006886|GO:0016192|GO:0030117
Rops7g01384 665 Gene3D - 451 585 IPR011989 -
Rops7g01384 665 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Rops7g01384 665 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 438 IPR044520 GO:0005096
Rops7g01384 665 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Rops7g01384 665 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Rops7g01384 665 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 620 665 IPR032154 -
Rops7g01384 665 Gene3D - 615 665 IPR012295 -
Rops7g01384 665 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Rops7g01384 665 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Rops7g01384 665 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Rops7g01384 665 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01384 Rops-Chr7 19125884 19137544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01384 16 150 C2H2 Transcription Factor Family AT4G05330 43.357 1.22e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01384 K12486 - gmx:100789910 718.383