Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01378 ATGACTTCAACACCCCTTTGGAGGAATGGCCCTCGAGGCCCAAAGTCACCGTGCAATGCATGTGGGATCAGATTCAAGAAGGCAGAAAGAAGAAACTCCTCGGCCAGATGCTTGAACATCAAAGGAGCGACAAACTGGGTGATTTCTGAAAGGGAGAAAGCAAGCATAGAGGACAAAAAAGGATTGGATCTGGATGGATTTGAATGGGGTTGGATGCATTAA 222 0.4685 MTSTPLWRNGPRGPKSPCNACGIRFKKAERRNSSARCLNIKGATNWVISEREKASIEDKKGLDLDGFEWGWMH* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01378 73 Gene3D - 1 60 IPR013088 GO:0006355|GO:0008270
Rops7g01378 73 Pfam GATA zinc finger 2 30 IPR000679 GO:0006355|GO:0043565
Rops7g01378 73 SMART GATA_3 2 45 IPR000679 GO:0006355|GO:0043565
Rops7g01378 73 PANTHER GATA TRANSCRIPTION FACTOR 18 2 44 IPR044272 GO:0003700|GO:0009908
Rops7g01378 73 ProSiteProfiles GATA-type zinc finger domain profile. 1 26 IPR000679 GO:0006355|GO:0043565
Rops7g01378 73 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 52 - -
Rops7g01378 73 CDD ZnF_GATA 2 27 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01378 Rops-Chr7 19054705 19055022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01378 2 36 C2C2-Gata Transcription Factor Family AT4G36620 88.571 4.44e-16 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops7g01378 GATA 3.2e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01378 - - cave:132188340 72.4034