Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01368 ATGGGAGTTCCAGAGAAAGACCCTCTTTCACAATTGAGTTTACCTCCTGGATTTCGGTTTTACCCCACAGACGAGGAGCTTCTTGTTCAATATCTATGTCGCAAGGTTGCAGGTCACCATTTTTCTCTCCCAATTATAGCTGAAATCGATTTGTACAAGTTCGATCCATGGGTTCTTCCAAGCAAAGCGATTTTCGGTGAGAAAGAATGGTACTTTTTCAGTCCAAGAGACAGAAAGTATCCAAACGGGTCTCGACCCAATAGAGTAGCTGGATCCGGGTACTGGAAGGCCACCGGAACTGATAAGATCATTACCACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCTCTTGTTTTCTATATTGGCAAAGCTCCCAAAGGTACCAAAACCAATTGGATCATGCACGAATATCGTCTTCTTGATTCTTCTCGAAAGAACAGTGGCACCAAGTTGGATGATTGGGTTCTGTGTCGGATATACAAGAAGAACTCGAGCTCACAGAAGGCAGCATCAAACGGCGGCGTTTCAAGCAAAGAATACACCCAATACAGCAACGGTTCATCTTCTTCATCATCGTCCCACCTCGACGATGTTATGGAATCTCTACCACAGATTGAGGACCAGTGTTTCATGCTGCCACGTGTCAACTCGATGAGAACGCTGCAACATCAAGAGGAGAAGCTCAATCTTCAGAACCTTGGTGCTGGGAATTTGATGGATTGGTCTAACCCAGCAATTATGAACACGGTTTCGGAGTTTGGGTCGGGTAACCAAACAACGGTTCAGGGTCAAGCTCAGGGGATGGTGAATTTCGGTGGGTGTAATGACCTATATGTCCCCACACTCTGTCACGTGGAGTCGTCGGGGAAGATGGGGAAACCGGCGGAGGAGGAGGTTCAGAGCGGAGTTAGAACCCAATCTGGGTTTTTCCAGCGCGGTCCGAATGATTTCACACAAGGATTCTCGAATTCGGTTGATCAGTATGGGTTCAGATACGCTGAGCCGGTCGGGTACGGGTTCGGGCAATGA 1029 0.4713 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRKNSGTKLDDWVLCRIYKKNSSSQKAASNGGVSSKEYTQYSNGSSSSSSSHLDDVMESLPQIEDQCFMLPRVNSMRTLQHQEEKLNLQNLGAGNLMDWSNPAIMNTVSEFGSGNQTTVQGQAQGMVNFGGCNDLYVPTLCHVESSGKMGKPAEEEVQSGVRTQSGFFQRGPNDFTQGFSNSVDQYGFRYAEPVGYGFGQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01368 342 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Rops7g01368 342 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Rops7g01368 342 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Rops7g01368 342 FunFam NAC domain-containing protein 72-like 23 167 - -
Rops7g01368 342 MobiDBLite consensus disorder prediction 167 197 - -
Rops7g01368 342 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Rops7g01368 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01368 Rops-Chr7 18789688 18791489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01368 1 329 NAC Transcription Factor Family AT4G27410 56.647 4.06e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g01368 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01368 - - gmx:100170718 545.428