Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01355 ATGAAGAAACGACGGTCACAGAGGGAGGAGAATTTGTTGAACAAAAAAATGATGGCATTTCAGATGAGGGAGAACAGTGGAGGCAGGGAAGAGCGACCGAAGTGTACGTGTGAAACCTTCCAAGAAGCTGTTTGCCAGAATCCGAAGGCCGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGCATCTATTAACTCAGCAAAAAATGCAGTTGCTGCATTGGATGGATTGGATGTTGGTGGACGCAAAATGCGAGTTAGATTTTCAGTTAAGATGAATGCTAAGAAGAGGAATCTTGAGACAATGAACTCGTCACCCAAGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTGCTAGGTCTGCTAAGCCTGAAGACGTGAGATATCTTTTTGGTCAATTTGGTAATGTGGCTAGTGTAATGGTGTTGCAAGATTTGAAACAAGGGAAAAGTCGGGTCTATGCCTTTGTCTCTTATCTTTCAGAGAGACATGGTGACGTGACAACTTCAGGGGCATCTTTTGTGACAACTCAATCATCCACGTGCCACGTGATCTTGTTACACGGCGTGACTAACTGA 594 0.436 MKKRRSQREENLLNKKMMAFQMRENSGGREERPKCTCETFQEAVCQNPKAGESRGSAYVTMASINSAKNAVAALDGLDVGGRKMRVRFSVKMNAKKRNLETMNSSPKRTIYYEGPHKLYVGNLARSAKPEDVRYLFGQFGNVASVMVLQDLKQGKSRVYAFVSYLSERHGDVTTSGASFVTTQSSTCHVILLHGVTN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01355 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 197 IPR000504 GO:0003723
Rops7g01355 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 91 IPR000504 GO:0003723
Rops7g01355 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 168 IPR000504 GO:0003723
Rops7g01355 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 84 IPR000504 GO:0003723
Rops7g01355 197 Gene3D - 37 102 IPR012677 -
Rops7g01355 197 Gene3D - 113 165 IPR012677 -
Rops7g01355 197 PANTHER OS02G0815200 PROTEIN 41 169 - -
Rops7g01355 197 SMART rrm1_1 16 87 IPR000504 GO:0003723
Rops7g01355 197 SMART rrm1_1 117 190 IPR000504 GO:0003723
Rops7g01355 197 SUPERFAMILY RNA-binding domain, RBD 44 167 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01355 Rops-Chr7 18590787 18591755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01355 37 164 Eukaryotic Initiation Factors Gene Family AT2G23350 25.781 5.27e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01355 - - gmx:100803098 190.274