Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01354 ATGCAGCATCGCGCATGCCATCATACAACAGTTTTGAATTTCAAGCATAGAAATCGAAGAGACGGGTTTTGCGTCTACTCTCCTTTCCTGGTGAAGAAGTGGAAGCAGCCGTCCCTAACCCTAATCTTTCCATTCGTCTTCGATCAGCTCAGGATGGAGTCTCAGGTGAAGCATGCTGTGGTTATCAAAGTTATGGGTCGTACTGGATCTAGAGGACAGGTGACCCAAGTTAGAGTGAAGTTCTTGGATGATCAGAACCGTTACATCATGAGGAACGTGAAAGGACCAGTTAGAGAAGGAGACATTCTCACCCTACTGGAGTCTGAAAGGGAAGCAAGAAGGTTGCGCTAG 351 0.4701 MQHRACHHTTVLNFKHRNRRDGFCVYSPFLVKKWKQPSLTLIFPFVFDQLRMESQVKHAVVIKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01354 116 Gene3D - 51 116 IPR012340 -
Rops7g01354 116 FunFam 40S ribosomal protein S28 48 116 - -
Rops7g01354 116 Pfam Ribosomal protein S28e 55 115 IPR000289 GO:0003735|GO:0005840|GO:0006412
Rops7g01354 116 ProSitePatterns Ribosomal protein S28e signature. 107 115 IPR028626 -
Rops7g01354 116 CDD S1_S28E 57 116 IPR000289 GO:0003735|GO:0005840|GO:0006412
Rops7g01354 116 Hamap 30S ribosomal protein S28e [rps28e]. 52 116 IPR000289 GO:0003735|GO:0005840|GO:0006412
Rops7g01354 116 SUPERFAMILY Nucleic acid-binding proteins 52 116 IPR012340 -
Rops7g01354 116 PANTHER 40S RIBOSOMAL PROTEIN S28 52 116 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01354 Rops-Chr7 18573118 18575141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01354 52 116 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 5.08e-36 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01354 K02979 - csv:101212501 102.834