Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01325 ATGGCTGAGTCCACAGAATTGTTTCCCTTAAGCCAACATTTAGGTGGTTTCATGCACATGTATGTGTATATCATCACTTTTGATCTTCCAACTATCATCATTATTTGTATCATAGTCACACTGTTCTTCTTCATATTCTATCAAATTCTCAATGGTTTATTCTATTGGTTCATGGAAATGAGGCCTAATGAACATGATATTGAAGAAGGAACTAATCTAGCTTATGGTGGTGACTCAGGGGGCCCATCTCATCAGGTTACTACCATCTTTCATGCTCTTGTCCTTAGCAATGTTCAGGCTTGGACAATGTTGGCTGCATTTGAAGGAGATTTTGATCAGAAAAGAGGGCAAAAGCTTAGAGCTTCAAAGAAATTGCCACCTTTGGTGAACTATGGAAAGCATGATGTAATGAGAAGTTCTAATGAGTGTGTCATTTGCTTGGAAGATTTTGAAGTTGATCAGTTTTGTCAAGTTTTTCCTGTGTGCAATCACATTTTTCATTCAGATTGCATAGACCATTGGTTGCAGAAGAAATCAACATGTCCTATATGTCGTAGTAGCATTATAGATTAA 573 0.3717 MAESTELFPLSQHLGGFMHMYVYIITFDLPTIIIICIIVTLFFFIFYQILNGLFYWFMEMRPNEHDIEEGTNLAYGGDSGGPSHQVTTIFHALVLSNVQAWTMLAAFEGDFDQKRGQKLRASKKLPPLVNYGKHDVMRSSNECVICLEDFEVDQFCQVFPVCNHIFHSDCIDHWLQKKSTCPICRSSIID* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01325 190 CDD RING-H2_PA-TM-RING 142 185 - -
Rops7g01325 190 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 31 188 IPR044675 -
Rops7g01325 190 SUPERFAMILY RING/U-box 142 188 - -
Rops7g01325 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 189 IPR013083 -
Rops7g01325 190 SMART ring_2 143 184 IPR001841 -
Rops7g01325 190 Pfam Ring finger domain 141 185 IPR001841 -
Rops7g01325 190 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01325 Rops-Chr7 18005250 18005822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01325 29 188 C3H Transcription Factor Family AT1G53010 31.176 1.83e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01325 - - gmx:102660073 259.225