Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01321 ATGGAAACATGTGACCAATTGATCCTGAGTGATCGAGATTTTCAGAAAATGGGTCGTGGAAAGATACCTATGGAACTCATTCCGAAGGAAAAAGCTCGGAAGACAACATATCAGAAGAGAAAGAACGGGTTGACTAAGAAGGTTTATGAGTTTGCCACTCTGTGTGGGGTTGATGTTTGCGCAATTATCTATGCCCCCAACTTTGATGGCCAAGGAATTGCTGAACCTGAAACATGGCCTCAAGACCCAAGAGAGGTACATCACATCATTCAAAAGTACCATAACACAACTATTGACAGGCGTCCCAAGATCTATGATGTGCAAGAGTATTACAAGGATAGGATGAAAAAAGTTGACGCTGAGATTTCCAAAGTGCGCAAAGAGAGGCTCAAGATCATGTACCCAACATGGGATGATGACTCTTTCAATGCTCTTGGAGAGGAACAACTCAGGATCTTTGTTAGCATGCTGGATGCTAAGCTTGACGCTTGTAGTCAAAAGTTGAATATGCTAAAAGGAGATCCTAAGGGAAAAGCAGTAGCAGAATCAGATAATTCTGAGACACTTAGTGCATACTTGTCCTCAATTCCAAGTAGCCACCTCAATCTCATGGAGAACATGCCTCAAGCACAACTTTTTCCTCCCCCTTTGAATATGAAGTCAGTCAGTGATGTGAACCAGTTAGTATTTTGCCCCTTTCAGCTTGGCCAGAGTTCTCAACCTTCCAGACATCAGTTTGGTCAGAATTATATGCAATTGATGGAAAAAAAATGGAATGGTGGATTGGGTTAA 792 0.4205 METCDQLILSDRDFQKMGRGKIPMELIPKEKARKTTYQKRKNGLTKKVYEFATLCGVDVCAIIYAPNFDGQGIAEPETWPQDPREVHHIIQKYHNTTIDRRPKIYDVQEYYKDRMKKVDAEISKVRKERLKIMYPTWDDDSFNALGEEQLRIFVSMLDAKLDACSQKLNMLKGDPKGKAVAESDNSETLSAYLSSIPSSHLNLMENMPQAQLFPPPLNMKSVSDVNQLVFCPFQLGQSSQPSRHQFGQNYMQLMEKKWNGGLG* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01321 263 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Rops7g01321 263 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Rops7g01321 263 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Rops7g01321 263 Gene3D - 29 119 IPR036879 GO:0003677|GO:0046983
Rops7g01321 263 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Rops7g01321 263 SUPERFAMILY SRF-like 18 116 IPR036879 GO:0003677|GO:0046983
Rops7g01321 263 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Rops7g01321 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 191 - -
Rops7g01321 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 67 IPR002100 GO:0003677|GO:0046983
Rops7g01321 263 CDD MADS_SRF_like 18 94 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01321 Rops-Chr7 17978496 17985176 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01321 17 233 Type I MADS-box Gene Family AT5G55690 35.268 5.47e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops7g01321 SRF-TF 1.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01321 - - tpra:123913303 295.819