Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01319 ATGGGTCGTGGAAAGATACCTATGGAACTCATTCCGAAGGAAAAAGCTCGGAAGACAACATATCAGAAGAGAAAGAATGGGTTGATTAAGAAGGTTTATGAGTTTGCCACTCTGTGTGGGGTTGATGTTTGCGCAATTATCTATGCCCCCAACTTTGATGGCCAAGGAATTGCTGAACCTGAAACATGGCCTCAAGACCCAAGAGAGGTACATCGCATCATTCAAAAGTACCATAACACAACTATTGACAGGCGTCCCAAGATCTATGATGTGCAAGAGTATTACAAGGATAGGATGAAAAAAGTTGACGCTGAGATTTCCAAAGTGCGCAAAGAGAGGCTCAAGATCATGTACCCAACATGGGATGACTCTTTCAATGCTCTTGGAGAGGAACAACTCAGGATCTTTGTTAGCATGCTGGATGCTAAGCTTGACGCTTGTAGTCAAAAGTTGAATATGCTAAAAGGAGATCCTAAGGGAAAAGCAGTAGCAGAATCAGACAATTCTGAGACACTTAGTGCATACTTGGCCTCAATTCCAAGTAGCCACCTCAATCTCATGGAGAACATGCCTCAAGCACAACTTTTTCCTCCCCCTTTGAATATGAAGTCAGTCAGTGATGTGAACCAGTTAGTATTTTGCCCCTCTCAGCTTGGCCAGAGTTCTCAACCTTCCAGGTTTCAGTTTGGTCAGAATTATATGCAATTGATGGAAAAAAATGGAATGGTGGATTGGGTTAATCAAGCTGGAGTTGTTACTTATGATCCCAAAACTGGTATGCTAAACCAGGATGAAGCTGAAAATAATCAAAACTCCTCACCATTCTATTACAATGGAAATATACAAACGATGCAGCAACATACTATTGCTTTGCAGACTCTTCCTCCTCAAAACTCGCAGTATGAAGCAGCTTTCCAGACTCACTCAGATCTACCACCTGAGTATCGACTTAATGGATTCTACGATATAAATATGCTTCAAGCTCATATTTTCAACTACATGCATGGAAAGAAGTAG 1017 0.4149 MGRGKIPMELIPKEKARKTTYQKRKNGLIKKVYEFATLCGVDVCAIIYAPNFDGQGIAEPETWPQDPREVHRIIQKYHNTTIDRRPKIYDVQEYYKDRMKKVDAEISKVRKERLKIMYPTWDDSFNALGEEQLRIFVSMLDAKLDACSQKLNMLKGDPKGKAVAESDNSETLSAYLASIPSSHLNLMENMPQAQLFPPPLNMKSVSDVNQLVFCPSQLGQSSQPSRFQFGQNYMQLMEKNGMVDWVNQAGVVTYDPKTGMLNQDEAENNQNSSPFYYNGNIQTMQQHTIALQTLPPQNSQYEAAFQTHSDLPPEYRLNGFYDINMLQAHIFNYMHGKK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01319 338 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops7g01319 338 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Rops7g01319 338 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops7g01319 338 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops7g01319 338 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops7g01319 338 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops7g01319 338 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops7g01319 338 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 226 - -
Rops7g01319 338 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Rops7g01319 338 SUPERFAMILY SRF-like 2 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01319 Rops-Chr7 17973063 17974079 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01319 1 122 Type I MADS-box Gene Family AT5G55690 43.902 2.09e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops7g01319 SRF-TF 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01319 - - ccaj:109800518 408.683