Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01293 ATGGAGCCTGTGGTCCACACCCCTTCCACCTTCTTTTCTACTTTTTTGCTCTCTATAAACTCCCTCTCTCACTCCCATTCCTCCCCAAAGGCATGGTTCTACCCGTTTTCTTACTTGTCTCAATTTTTTTCTTCATCATCATTGTCAGCACTCACAATGAAGGCCAGGAGTAAGGAGAGGAAGCAATTGTCAACTGAGAAGATGAGCAAGGACATCAAAGTTGAAGAAGTGGAAGATGAAGAGGAGGAGGATGAAAGTGGGGGTGGTGGTCTTGCAGAAGAAGATGAGAAGAAGAAAGGTTCTGGTGTGAGTGGGAGAAGAGGGTCAAGCGGGGGTGGAAGATTTTCTTCACCTTTCTGTCAGGCAGAGAGTTGTGGTGCTGATTTGACTGTTGCAAAGAGGTATCATCGCCGCCATAAGGTGTGTGAATTTCACTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGAACTGGCGGAGTTTGATGAAACTAAAAGAAGCTGCCGGAGAAGATTAGCCAGACACAATGAGCGGCGCCGGAAAAGCAATGCTGAAACTTTCAATGAAGGATGCAGTAGCAGCAAAGAGCAACACCCTATGGAAAGCCACTGCATAAATGATGATGATTGGGGAATGGTTGAGATGGACATGGCAAGGAGTTCTGGTTACAAGTCCTTCCATATCAGATGA 726 0.4697 MEPVVHTPSTFFSTFLLSINSLSHSHSSPKAWFYPFSYLSQFFSSSSLSALTMKARSKERKQLSTEKMSKDIKVEEVEDEEEEDESGGGGLAEEDEKKKGSGVSGRRGSSGGGRFSSPFCQAESCGADLTVAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHELAEFDETKRSCRRRLARHNERRRKSNAETFNEGCSSSKEQHPMESHCINDDDWGMVEMDMARSSGYKSFHIR* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01293 241 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 67 197 IPR044817 GO:0003677
Rops7g01293 241 MobiDBLite consensus disorder prediction 75 90 - -
Rops7g01293 241 MobiDBLite consensus disorder prediction 58 112 - -
Rops7g01293 241 MobiDBLite consensus disorder prediction 186 214 - -
Rops7g01293 241 FunFam Squamosa promoter-binding-like protein 14 112 181 - -
Rops7g01293 241 MobiDBLite consensus disorder prediction 58 74 - -
Rops7g01293 241 Pfam SBP domain 120 193 IPR004333 GO:0003677
Rops7g01293 241 SUPERFAMILY SBT domain 118 199 IPR036893 GO:0003677|GO:0005634
Rops7g01293 241 Gene3D - 111 181 IPR036893 GO:0003677|GO:0005634
Rops7g01293 241 ProSiteProfiles Zinc finger SBP-type profile. 117 194 IPR004333 GO:0003677
Rops7g01293 241 Coils Coil 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01293 Rops-Chr7 17554941 17556405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01293 59 209 SBP-box Gene Family AT3G60030 50.323 3.94e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops7g01293 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01293 - - gmx:100815775 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01293 7 17554941 17556405 Rops11g00588 11 8254647 8256584 ECH
Rops7g01293 7 17554941 17556405 Rops7g01293 7 17554941 17556405 ECH