Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01287 ATGGATAACTACTACCATCGCTTGGACAACAATGATGCTCATTTGCCTCCTGGTTTTAGGTTCCACCCCACTGATGAAGAGCTCATAACTTATTACCTTCTCAAGAAGGTTCTTGACAACACCTTCACTGGAAGAGCCATAGCTGAAGTTGATCTTAACAAGTGTGAGCCATGGGAGCTACCTGAGAAAGCAAAGATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGATAGGAAGTACCCAACTGGTTTACGTACCAATAGGGCCACAGAAGCTGGTTATTGGAAAGCTACAGGGAAAGATAGAGAGATTTACAGCTCAAAAACTTGCTCCCTTGTTGGCATGAAGAAAACCCTTGTTTTCTACAGAGGAAGGGCACCCAAAGGTGAAAAGAGTAATTGGGTTATGCATGAATATCGCCTTGAAGGCAAATTTGCTTACCATTACCTCTCTAGGAACTCCAAGGATGAGTGGGTGATTTCACGTGTGTTTCAAAAGAACAACACTAGCAATGGAGGCTCCACCATTTCTGCTGCCAGCAGTGGTTCCAAGAAGACCACAAGAACAAGCATGAGCACCACTTCTGCTAGCAATAGCATAAGCCATTGCCCTGAACCAAGTTCTCCCGCTTCAGTTTATCTTCCACCACTTCTGGATTCTTCTCCATACCCCAACACCACCACCACCAACAACAACCCAAAGGAGCACGTGTCCTGTTTCTCCACAATAGCTTCAGCCACAAACGCTGTCGTCTCCAACAACAACAACTTCAATGCAAGTTTCGACCTTTCACCTCTCTCTGTTGACCCTTTTGCTCGGTTTCAAAGAAACATTGGTGTTTCTGCATTTCCAAGCTTGAGATCATTACAAGACAACCTTCAACTTCCTTTCTTTTTCTCCCCGGCGGCGCAGCCTTTCAACGGTGGTGGTACCGGTGACATCCTCGGCGGGAGCTGGCCAATGCCGGAGGAGCAAAGGGTGGTGGTTGATGGTTGTTCTAGCATGGCATTGGGATCCTCTGAGCTTGATTGCATGTGGGGCTATTGA 1050 0.4676 MDNYYHRLDNNDAHLPPGFRFHPTDEELITYYLLKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKNNTSNGGSTISAASSGSKKTTRTSMSTTSASNSISHCPEPSSPASVYLPPLLDSSPYPNTTTTNNNPKEHVSCFSTIASATNAVVSNNNNFNASFDLSPLSVDPFARFQRNIGVSAFPSLRSLQDNLQLPFFFSPAAQPFNGGGTGDILGGSWPMPEEQRVVVDGCSSMALGSSELDCMWGY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01287 349 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Rops7g01287 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 226 - -
Rops7g01287 349 MobiDBLite consensus disorder prediction 172 207 - -
Rops7g01287 349 FunFam NAC domain-containing protein 100-like 24 171 - -
Rops7g01287 349 MobiDBLite consensus disorder prediction 172 210 - -
Rops7g01287 349 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Rops7g01287 349 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Rops7g01287 349 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01287 Rops-Chr7 17463498 17465348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01287 4 349 NAC Transcription Factor Family AT5G53950 51.587 3.80e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g01287 NAM 4.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01287 - - vun:114185732 507.679