Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops7g01282 | ATGGCTCCAAGGGACAGAGCAGCCACCACCACCGCACTCACCGGGCCCAACCCAATAGCCCACAACGCCAAGGAGATTAGATTCCGTGGCGTTAGGAAGCGTCCCTGGGGTCGTTACGCCGCCGAGATCCGCGACCCTGGGAAGAAGACACGTGTCTGGCTGGGAACCTTTGACACGGCGGAGGAGGCAGCACGTGCTTATGACGCGGCGGCGCGTGAGTTTCGTGGTGCTAAGGCAAAGACAAATTTTCCAACACCTTCTGAGCTTGTTAACAACACCACGCGCAGCCCTAGTCAAAGTAGCACTCTTGAATCTTCATCTCCTCCTCCTCCACCGTTGGACCTTACTCTAACCCCTCTCTCCGTCTCCGGCGCCACCGTAGGGTTCCCGGTGGGTCGACCCATGTTGTTTTTTGATGCTTTTGCACGTGCTGAGAGCGTGCTTAATGTTGGTCGCCGGGAAATTTGTGGTTTTGATCGTCCGGTGGCTGATTTTCGCCACGTCACCGTGCCAAGTGACTCTGATTCTTCCTCCGTCGTGGACTATGACCATGTCCCACGTCAGAGACTGTTGGATCTTGACCTTAACGTTCCTCCTCCGCCGGAGGTTGCTTGA | 615 | 0.5642 | MAPRDRAATTTALTGPNPIAHNAKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSELVNNTTRSPSQSSTLESSSPPPPPLDLTLTPLSVSGATVGFPVGRPMLFFDAFARAESVLNVGRREICGFDRPVADFRHVTVPSDSDSSSVVDYDHVPRQRLLDLDLNVPPPPEVA* | 205 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops7g01282 | 204 | Gene3D | AP2/ERF domain | 26 | 85 | IPR036955 | GO:0003700|GO:0006355 | |
Rops7g01282 | 204 | SUPERFAMILY | DNA-binding domain | 28 | 85 | IPR016177 | GO:0003677 | |
Rops7g01282 | 204 | CDD | AP2 | 27 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Rops7g01282 | 204 | PRINTS | Ethylene responsive element binding protein signature | 28 | 39 | IPR001471 | GO:0003700|GO:0006355 | |
Rops7g01282 | 204 | PRINTS | Ethylene responsive element binding protein signature | 50 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Rops7g01282 | 204 | Pfam | AP2 domain | 27 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Rops7g01282 | 204 | FunFam | Ethylene-responsive transcription factor 2 | 27 | 85 | - | - | |
Rops7g01282 | 204 | SMART | rav1_2 | 27 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Rops7g01282 | 204 | ProSiteProfiles | AP2/ERF domain profile. | 27 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Rops7g01282 | 204 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 21 | 143 | - | - | |
Rops7g01282 | 204 | MobiDBLite | consensus disorder prediction | 78 | 113 | - | - | |
Rops7g01282 | 204 | MobiDBLite | consensus disorder prediction | 84 | 103 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops7g01282 | Rops-Chr7 | 17421164 | 17422140 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops7g01282 | 17 | 154 | AP2-EREBP Transcription Factor Family | AT3G15210 | 58.065 | 2.29e-50 | 161 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Rops7g01282 | AP2 | 3.2e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops7g01282 | K09286 | - | gmx:100500601 | 223.402 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops7g01282 | 7 | 17421164 | 17422140 | Rops11g00596 | 11 | 8395006 | 8396188 | ECH | |
Rops7g01282 | 7 | 17421164 | 17422140 | Rops7g01282 | 7 | 17421164 | 17422140 | ECH |