Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01282 ATGGCTCCAAGGGACAGAGCAGCCACCACCACCGCACTCACCGGGCCCAACCCAATAGCCCACAACGCCAAGGAGATTAGATTCCGTGGCGTTAGGAAGCGTCCCTGGGGTCGTTACGCCGCCGAGATCCGCGACCCTGGGAAGAAGACACGTGTCTGGCTGGGAACCTTTGACACGGCGGAGGAGGCAGCACGTGCTTATGACGCGGCGGCGCGTGAGTTTCGTGGTGCTAAGGCAAAGACAAATTTTCCAACACCTTCTGAGCTTGTTAACAACACCACGCGCAGCCCTAGTCAAAGTAGCACTCTTGAATCTTCATCTCCTCCTCCTCCACCGTTGGACCTTACTCTAACCCCTCTCTCCGTCTCCGGCGCCACCGTAGGGTTCCCGGTGGGTCGACCCATGTTGTTTTTTGATGCTTTTGCACGTGCTGAGAGCGTGCTTAATGTTGGTCGCCGGGAAATTTGTGGTTTTGATCGTCCGGTGGCTGATTTTCGCCACGTCACCGTGCCAAGTGACTCTGATTCTTCCTCCGTCGTGGACTATGACCATGTCCCACGTCAGAGACTGTTGGATCTTGACCTTAACGTTCCTCCTCCGCCGGAGGTTGCTTGA 615 0.5642 MAPRDRAATTTALTGPNPIAHNAKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSELVNNTTRSPSQSSTLESSSPPPPPLDLTLTPLSVSGATVGFPVGRPMLFFDAFARAESVLNVGRREICGFDRPVADFRHVTVPSDSDSSSVVDYDHVPRQRLLDLDLNVPPPPEVA* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01282 204 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Rops7g01282 204 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Rops7g01282 204 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Rops7g01282 204 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Rops7g01282 204 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Rops7g01282 204 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Rops7g01282 204 FunFam Ethylene-responsive transcription factor 2 27 85 - -
Rops7g01282 204 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Rops7g01282 204 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Rops7g01282 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 143 - -
Rops7g01282 204 MobiDBLite consensus disorder prediction 78 113 - -
Rops7g01282 204 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01282 Rops-Chr7 17421164 17422140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01282 17 154 AP2-EREBP Transcription Factor Family AT3G15210 58.065 2.29e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops7g01282 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01282 K09286 - gmx:100500601 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01282 7 17421164 17422140 Rops11g00596 11 8395006 8396188 ECH
Rops7g01282 7 17421164 17422140 Rops7g01282 7 17421164 17422140 ECH