Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01271 ATGGATCAGATGACAGATTCTGATATGGATCAACAAAGACAAGGCTATTTCCAGTCTGAACCCTGTATCCTTTTGAGAGGCAATACTAGTGTTGCGCAGCCTAATATACGCCCAGTGGTGACAGCTTCAGGGAACACAACTAATGTTGATCCTCACTATTTACCAGATGCTTATGACAATACTAGGGTGTATGGGATTACACAATACAATGGCATTCAGCCTCAGCACAATCTTGATATGGGTGTTGCAGCTGCAACCAACTTATATTATTCTGGTGTGAACCCTTCTTCTAGTACCGGTGTATTCCCCATGCCTTTAAATCACAGAGCCTCTGATCAGTTGCCAGGTTCAAGCACATTTGCAGTCTCTGGGGTTCCCTCAGATAATTTTGGAAGAAGTACTGGTTTCATGGATGATGTTAGAGGTCCATACAAAAGGAAAATTGCTGAAGGGATTAGAGGAAATTACCAGCATTTCAATGCTTCAACTAGTTCTTCAGTTGCTCCCCCTAATGCAAGACACGCTGATGGGGTTACTATGATGGATACCACATCATATTCGTTCCGCATCCCTTCACTTATGGAAGTAGGGCCACATGGTAGTGCATGGAGCAGATCAAGTGAGCCTATTATGATGCATGACCATAACCATTTGATTCATGGAAACTATTTAGGGCAGCACTTTCAGCCAGCTGCTCCTCCCTGGTTGGACCCACAGCTAAATAGTAATAACAATGATGGCCATACTACAGCCTGGAACCAGTCTCTTCCAATGCCTTATATACAAGCACCTAATGTAAATGGAAGTTCATTAGAGGGTCCAAGTATGGGTTTGCAAAGATATCATGATACAGCTGGCAACAGAAACGGCCTTAGGTTTCCTCATCCTCCTCCTCCTCCCCCTGTCAACCAACAGCACCATAGTTATCATCATCCAACACTGCCTATGCAAGGAGTAAGAGGTCACAATATCAACTTTCACCCTCCGGTAACTGCTGCTTCATTTAGAGTTCCAACAAATCCTTCACGAAGTGCTGTGATCCCCACACAAACTGGTTTTGAGATGGGTCCTAGGCATGCTGGCCCGGCACCATCTGCAGGCTTCCGGATTTATCGACCTCATAGAGGAGGCACGCATGATACAACTCTTGGACATCGAAGTCTTCCTCCCATGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATTGGTAATGTAAGCACTGGGTTATCAGAGGAAACAATTACATATCAATTGAAAACAAAAACTTATTCAGCGCTTGCTACTGCTATTAATTTGGAGGAGGCAGCTTCTGACGATCAGGAAACTGATTCTTGTATAATATGTCAGGAGGAATTTAAGAACCAAGAGAGGATTGGAATTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAGGAAATGGTTGCTTGTCAAAAATGTCTGCCCTATATGCAAATCAGAAGCTTTGACTCCTGGAAGGAGGGATGTATAG 1590 0.4371 MDQMTDSDMDQQRQGYFQSEPCILLRGNTSVAQPNIRPVVTASGNTTNVDPHYLPDAYDNTRVYGITQYNGIQPQHNLDMGVAAATNLYYSGVNPSSSTGVFPMPLNHRASDQLPGSSTFAVSGVPSDNFGRSTGFMDDVRGPYKRKIAEGIRGNYQHFNASTSSSVAPPNARHADGVTMMDTTSYSFRIPSLMEVGPHGSAWSRSSEPIMMHDHNHLIHGNYLGQHFQPAAPPWLDPQLNSNNNDGHTTAWNQSLPMPYIQAPNVNGSSLEGPSMGLQRYHDTAGNRNGLRFPHPPPPPPVNQQHHSYHHPTLPMQGVRGHNINFHPPVTAASFRVPTNPSRSAVIPTQTGFEMGPRHAGPAPSAGFRIYRPHRGGTHDTTLGHRSLPPMGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITYQLKTKTYSALATAINLEEAASDDQETDSCIICQEEFKNQERIGILRCEHEYHADCLRKWLLVKNVCPICKSEALTPGRRDV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01271 529 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 113 522 IPR045191 GO:0061630
Rops7g01271 529 ProSiteProfiles Zinc finger RING-type profile. 477 518 IPR001841 -
Rops7g01271 529 Pfam Ring finger domain 475 518 IPR001841 -
Rops7g01271 529 SMART ring_2 477 517 IPR001841 -
Rops7g01271 529 MobiDBLite consensus disorder prediction 282 311 - -
Rops7g01271 529 FunFam E3 ubiquitin ligase BIG BROTHER 437 522 - -
Rops7g01271 529 SUPERFAMILY RING/U-box 471 523 - -
Rops7g01271 529 CDD RING-H2_RNF24-like 475 521 - -
Rops7g01271 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 522 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01271 Rops-Chr7 17254475 17258570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01271 394 522 C3H Transcription Factor Family AT2G15530 46.667 8.90e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01271 K19041 - gmx:100800642 763.837