Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01262 ATGCTTAAAATTGTATTAGGACATGCAACAGGTCATACTGAAGGTGCTGCTGGCATGAATTTCAAGGGCATAATAGGAGCTATTGCAGATGAAAATTCCCGTGATGGTAAAGAGGCAATAGTGGCTATTAAGATTGCATTGGAGGATTTCTATCATGACAGCAATCAAAGGTTTGTTCTACGGATAAGGAACTCTCAAGGGGATCCCCTTAAGGCTGCACTTGCAGTAAGTGATCTTATTGACAAAAAGCATGTGCAAGCAGTTATAGGACCTCAAACATGGGAAGAGACAACTTTAGTGGCTGAGGTTTGTAACCAAAGTAACACGCCAGTTCTATCTCTAGCTGATGCAACTCCAAAGTGGTCAACTTTGAAATGGCCCTTCCTGGTGCAAACCTCACCATGTCAATTTAAGCAGATGAAAGCTGTAGCTGCAATTATTCAGTCCGGGAAATGGTACTGTGTTAACATCATATATGAAGATAGGGATGCTTCATCCACACAAGTTTTATCTAGTATCTATAGAGCACTCAATGAAGCAGATGTACGTATAAGCAATGTTTTAGCCATCCCACCTTTGGCTTCCTCTTCATTGTCCCATGAACTTGAGAAGCTTAGAGAAGGACAATGTAGAGTCTTTGTTGTTATCACTTCTCTTCCTGTGGCCATAAACCTGTTTGAAACTGCAAATAAGATGAATATGATGGAGAAAGATTCTGTGTGGATCTCAACTGGTCCTTTTACAAGTCTTGTCCATTCATTGAATGCATCAACTTTATCCTCAATGCAAGGGATCATTGGAGTCCAGGGCTACATCCCAGAAATAGGGCACCAATATGATGACTTCTACCTTAAATTTCGCCAGAAGTTTAGCTCAGAGAACCCTCAGGAATTTAATGATGAGCCTGGGATATTTGCAGCCTATGCCTATGATGCTGCATGGACTGTGGCTCTAGCCATGAGCCAAACCAATAGTAAAGGGGGCCAAGTTTTGCTAGATAAGATTTTGGTTAATAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCAATGACCAGAAGTTAGCTCCTTCACATACTTTTCAGATCATCAATATAATAGGAAAGGGTTATAAGGAAACTGGGTTTTGGTTAGATGGACTTGGTTTCTCAAAAGATATTGGCCAAAATGCTACTTACAGTTCTTCAATGAAGGAACTAGGACAAGTTTTATGGCCAGGAAGACCTTGGGACACTCCAAGAGGATGGGCCCTGCCAACAAATGATAAACCACTAAGAGTTGGGGTCCCTGCTCTGGTCACTTTGAAACAGAATTTCGATGCAGTGATTGATGTAACAATAACTTCATATCGATATCACTATGCTGACTTCACTCAGCCATACAGTGATCCTGGAGTGGTGATGGTAGTCCCTCTTAAAACAAAAGCAGGACATAAAGCTTGGTTATTCGTGAAGCCTTTCACAACGACCATGTGGATTCTTATAGTTGTTATGATTATCTACAATGGTTTTGTTCTATATATGTTAGAAAGACACCACTGCCCTGAACTTAGGGGCTCCATGCTGAATCAAACTGGGACCATGGCGTGGTTGACATTGACCCCTCTCATCAACTTCAATGACATGGGGGACAAGTTACACAACAGTTTATCAAGGATGGCTATGGTAGTCTGGCTCTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTACCAGCATGCTAACTGTTGAAAGGCTTGAACCCACAGTAGATGATGTTGATCAGCTACGGAATAACAATGCTGTGGTTGGGTATAATGCAGGATCCTTCTTGAAAAATTATCTGCAGGAAGTGTTACAGTTCCACCCTACAAACATCAGGCAATTTCGTGCACTAGAAGAGTATGCTGAAGCTCTCAGAAGGAAAGAAATAGCAGCTGCCTTTCTTGAATTTCCTTCTGCTAAAATTTTCCTTGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTATAAAATTGGAGGATTTGGATTTGCATTTCCAAAGGGATCTCCATTTCTTCCGAGTGTAAACAAAGCACTGCTAGATTTATTTGAAAGTGGCAAGCTACGTGAATTAGAGAACAAAATGCTTGGATTAGAGAAATGTGAAGAGACAGAACCATATGGAGAAACTGCAAGTCTTAGTCCCAACAGCTTCTGGGCCCTCTTCACATTGACAGCAGGCACATCAACAATTGCTCTCTTGGTTTACATCATTGGTTTGAATTATTCAAACCGTGAACATAAATTAATCAGGAGACTAATGATGGTAATGATACAACAATGGGGACATGCAAAGAGACGAATCTCAAGAAGAGGTAGTGATGTTACAGAAAGTTCCATGGACTCTCCAAATACACATGCTATGCCAAGTCAAGTTTAA 2412 0.408 MLKIVLGHATGHTEGAAGMNFKGIIGAIADENSRDGKEAIVAIKIALEDFYHDSNQRFVLRIRNSQGDPLKAALAVSDLIDKKHVQAVIGPQTWEETTLVAEVCNQSNTPVLSLADATPKWSTLKWPFLVQTSPCQFKQMKAVAAIIQSGKWYCVNIIYEDRDASSTQVLSSIYRALNEADVRISNVLAIPPLASSSLSHELEKLREGQCRVFVVITSLPVAINLFETANKMNMMEKDSVWISTGPFTSLVHSLNASTLSSMQGIIGVQGYIPEIGHQYDDFYLKFRQKFSSENPQEFNDEPGIFAAYAYDAAWTVALAMSQTNSKGGQVLLDKILVNNFTGLSGKIQFNDQKLAPSHTFQIINIIGKGYKETGFWLDGLGFSKDIGQNATYSSSMKELGQVLWPGRPWDTPRGWALPTNDKPLRVGVPALVTLKQNFDAVIDVTITSYRYHYADFTQPYSDPGVVMVVPLKTKAGHKAWLFVKPFTTTMWILIVVMIIYNGFVLYMLERHHCPELRGSMLNQTGTMAWLTLTPLINFNDMGDKLHNSLSRMAMVVWLFVALIITQTYTANLTSMLTVERLEPTVDDVDQLRNNNAVVGYNAGSFLKNYLQEVLQFHPTNIRQFRALEEYAEALRRKEIAAAFLEFPSAKIFLAKYCKEFIQAGPLYKIGGFGFAFPKGSPFLPSVNKALLDLFESGKLRELENKMLGLEKCEETEPYGETASLSPNSFWALFTLTAGTSTIALLVYIIGLNYSNREHKLIRRLMMVMIQQWGHAKRRISRRGSDVTESSMDSPNTHAMPSQV* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01262 803 MobiDBLite consensus disorder prediction 780 803 - -
Rops7g01262 803 SMART GluR_14 492 709 IPR001320 GO:0015276|GO:0016020
Rops7g01262 803 Pfam Receptor family ligand binding region 42 366 IPR001828 -
Rops7g01262 803 Gene3D - 135 376 - -
Rops7g01262 803 CDD PBP1_GABAb_receptor_plant 25 386 IPR044440 -
Rops7g01262 803 MobiDBLite consensus disorder prediction 786 803 - -
Rops7g01262 803 Pfam Bacterial extracellular solute-binding proteins, family 3 435 707 IPR001638 -
Rops7g01262 803 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 436 756 IPR015683 -
Rops7g01262 803 SUPERFAMILY Periplasmic binding protein-like I 25 415 IPR028082 -
Rops7g01262 803 FunFam Glutamate receptor 139 300 - -
Rops7g01262 803 Pfam Ligand-gated ion channel 708 738 IPR001320 GO:0015276|GO:0016020
Rops7g01262 803 Gene3D - 670 705 - -
Rops7g01262 803 PIRSF IGluLR_plant 430 801 IPR017103 -
Rops7g01262 803 PIRSF IGluLR_plant 3 437 IPR017103 -
Rops7g01262 803 Gene3D - 474 612 - -
Rops7g01262 803 Gene3D - 638 669 - -
Rops7g01262 803 FunFam Glutamate receptor 479 619 - -
Rops7g01262 803 SUPERFAMILY Periplasmic binding protein-like II 401 705 - -
Rops7g01262 803 Gene3D - 32 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01262 Rops-Chr7 17066397 17070974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01262 14 759 Ion Channels AT2G29120 29.952 1.96e-111 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01262 - - vra:106760680 936.791