Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01253 ATGATGAACAACGGAGTGTGCAGTCTTCGCACGTGCCTCCGTTTACCGGAGAGACCTCTTTTCCGAGCAACTCCTCTCTCATTCACTCGCCGGCGGCGGTTTCTCGCCACCGCATCGGAAACGAAGAAGAAAGAGAAGGTGATAGTGATTTCTGGACCAACCGGTTCCGGCAAGAGCCGTCTCGCAATGGAACTCGCAAAACGCCTCAACGGAGAAATCGTCAGTGCCGACTCCGTTCAGGTATATCGGGGTCTTGATGTTGGATCTGCAAAGCCTTCCCCAAATGATAGAAAGGAGGTACCGCATCATCTGGTTGACATACTTAACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTCGGGGGTACTGGATTGTATTTAAGATGGTTCATATATGGCAAGCCAGATGTGCCTAAAGCCTCTCCAGAGATTTCATCCGAAGTATATAAAGAGTTAGCAGAGCTACAGAGAAATGAAGATTGGGATGCTGCTGTGCAGTTGGTGGTTAAAGCAGGTGATCCAAAGGCCAAATTTTTAGCAGTGAATGATTGGTACCGATTATGTCGTAGTCTAGAGATTATTAAGTCTAGCGGATCACCTCCTTCTGCTTTTCGGGTACCGTATGATTCTTTCAGGGAACAGGGTGATTGTAGTGTTGCTGATGATTCTGAGTCGTCTGATATGAACACTTATGGTGATGCAATGGAAAAAACTGACTCGTCAGAGTTAGACTACGAGTTTATGTGTTTTTTCCTTTCTAGCCACAGACTTGACCTCTATAAATCACTTGATTATCGGTGTGAAGATATGCTATTAGGAAGGGATGGGATTTTGTCTGAGGCTCAATGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCCGCAACACGAGCAATTGGTTACAGACAAGGCATGGAGTACTTACTAAGATGCAGACAGCAAGGGGGCCAGAGTTCAGTAGGAGAATTTTACAGATTCTTGGCTGAATTTCAAAAAGCATCACGGAATTTTGCGAAAAGACAGTTGACATGGTTTCGCAATGAACGTATATATCATTGGCTTGATGCTTCTAAACCTCTGGAAACGGTTCTCAACTTCATTCATGATGCATACCAGGAATATAATGGAAATCTTCTTGTGCCTGAACACCTAAGAATGTCGAGAGATATTTCTAATCACCGAGAAGCTGCTCAACTTAAGTCTTACCGCACCAGAAATAGGCATTTTGTGAACGGGGAAGATTGTTCTCACATACTGGACTGGATAAGGAAGACTCAGATGTCTGCAAATTTGAAATTATGA 1365 0.4418 MMNNGVCSLRTCLRLPERPLFRATPLSFTRRRRFLATASETKKKEKVIVISGPTGSGKSRLAMELAKRLNGEIVSADSVQVYRGLDVGSAKPSPNDRKEVPHHLVDILNPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPEISSEVYKELAELQRNEDWDAAVQLVVKAGDPKAKFLAVNDWYRLCRSLEIIKSSGSPPSAFRVPYDSFREQGDCSVADDSESSDMNTYGDAMEKTDSSELDYEFMCFFLSSHRLDLYKSLDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATRAIGYRQGMEYLLRCRQQGGQSSVGEFYRFLAEFQKASRNFAKRQLTWFRNERIYHWLDASKPLETVLNFIHDAYQEYNGNLLVPEHLRMSRDISNHREAAQLKSYRTRNRHFVNGEDCSHILDWIRKTQMSANLKL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01253 454 Gene3D - 156 226 - -
Rops7g01253 454 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Rops7g01253 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 175 IPR027417 -
Rops7g01253 454 Gene3D - 44 431 IPR027417 -
Rops7g01253 454 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 380 IPR039657 -
Rops7g01253 454 Pfam IPP transferase 80 369 - -
Rops7g01253 454 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
Rops7g01253 454 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Rops7g01253 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01253 Rops-Chr7 16908848 16915696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01253 50 151 C2H2 Transcription Factor Family AT2G27760 37.255 2.88e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01253 K00791 - gmx:100808814 808.52