Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01250 ATGAATTGTTCTTGTCTTCTTTTCCGGAAAAGGGGATCTACCTCAGCCACACTACCAACTGAAGTTGATATAGATATTTCAAACATTCCGAATGTCAATCTTTACACTTACAAGGAATTGCAAATTGCCACCCAAGGTTTCAGTCCATCAAACAAGATAGGGGAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTTAGAAATGGTACTCTGGCTGCTATAAAGGTTTTGTCAGCTGAATCAAGACAAGGTGTCCGCGAGTTCTTGACAGAAGTCAAGGTGATCTCTAGTGTAGAGCATGATAATTTAGTTAAGTTGTACGGATGTTGTGTGGAAGGAAACCACAGGATTTTGGTATATGGCTATCTTGAGAATAGCAGCCTAGCACAAACACTTCTTGGTGGAGGCCATAGTAGCATCCAATTCAGTTGGCATGTGCGGCAAAACATCTGCATTGGTGTTGCTCGAGGTCTTGCTTTCCTTCATCATGAAGTTCAGCCACATATTATTCATAGAGACATTAAAGCAAGCAATATATTACTTGACAAAGACCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAACTTATTTCACCAGACCTGACCCATCTCAGTACACTTGTTGCTGGTACAACTGGCTATCTGGCCCCTGAATATGTAATACGACATCAGGCTTCTAGAAAATCAGATGTCTATAGTTTTGGAGTTCTTCTACTAGAAATTGTTAGTGGAAAGTGTAACACAAACAGACGTTTGCCTGTTGAAGAACGGTATCTTCATACAAGGGCATGGGATTTGTATGAAAGGGGGGAGCTGGAGAGTTTGGTGGATGTCTTTCTAGACAGAGACTTCAATTTTGAGGAGGCAATAAGGTTTTGTAAGATCGGTCTTCTTTGCATTCAGGATTCTCTTGAGCTCCGACCTTCTATGTCTACTGTGCTTGACATGCTGATAGGTGAAACAGATCTGAATGAGGAGAAGATGATAAAACCTGGCTTAATATTTGACTTTGTTGAAGCCAATGACCAAGGGAAACAGAAAGGCAAGGCTGAAGTGGGAGAAACTTTTTTCTCTGGTTCAGGAAAGCAAGATGATTCATCTTTATCAGGAACCACGAGTTCTTTGGCTACAATGACAGTCACTTCAATTTTTGACCGAAGCAATTAA 1170 0.4111 MNCSCLLFRKRGSTSATLPTEVDIDISNIPNVNLYTYKELQIATQGFSPSNKIGEGGFGSVYKGKLRNGTLAAIKVLSAESRQGVREFLTEVKVISSVEHDNLVKLYGCCVEGNHRILVYGYLENSSLAQTLLGGGHSSIQFSWHVRQNICIGVARGLAFLHHEVQPHIIHRDIKASNILLDKDLQPKISDFGLAKLISPDLTHLSTLVAGTTGYLAPEYVIRHQASRKSDVYSFGVLLLEIVSGKCNTNRRLPVEERYLHTRAWDLYERGELESLVDVFLDRDFNFEEAIRFCKIGLLCIQDSLELRPSMSTVLDMLIGETDLNEEKMIKPGLIFDFVEANDQGKQKGKAEVGETFFSGSGKQDDSSLSGTTSSLATMTVTSIFDRSN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01250 389 FunFam cold-responsive protein kinase 1 18 122 - -
Rops7g01250 389 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Rops7g01250 389 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Rops7g01250 389 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Rops7g01250 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Rops7g01250 389 CDD STKc_IRAK 53 318 - -
Rops7g01250 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Rops7g01250 389 Pfam Protein kinase domain 50 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01250 389 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01250 389 SMART serkin_6 47 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01250 389 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Rops7g01250 389 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01250 Rops-Chr7 16888850 16893250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01250 35 337 Receptor kinase-like Gene Family AT1G56120 53.795 1.04e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops7g01250 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01250 - - gmx:100797257 591.267