Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01245 ATGTTAGACAGCAACAAAATAGAAGATTTATACGATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTAAAGAGATATTTTCTGGTAATGACAATCTTCAGTCTAGCCAGAGGTGTCTTGTTTCTGGAGTTATCAACTTTGAACATGAATCTACTAAAAACACATTTAAATCATTTGGCTCTAGTGATGAAAACTCAGTCGTATTGCGTCCTTTGTCTCCAAGACTCTCACATCCTGAGGAGGACCTTAATTTAATTCAGCATTCCAAAGAGACTGCTCTGGGGTGTATGCCAGAGAGTTTCATTTATGGAGACCAGAATGACGAGGATGTAAATGTCAAACGTATGAAATTTTCTCTGTATGAACTTCCTTGTACTAGAGCTAACTCAGAAAATGTTTCGAGTTCATCAGGACTTGCAAAAGCAGTAGTTTCTAACCCGTCTGTTGCTGCTACAGACTGTGATAATGAACACATTGCATTTCGATTAGTCGAATCATCTAAACATGGTGTGATATCTAATTGTTATCTGTTGAAGCGTAACATGTTACAGAATAATCAAGCTGCTAAGGATGATGTAGATGTTACGAATTGTAAATTAACTACTGCAGATAGGAATGTCGCTAAAGAGGTGTCCGTAAGTAAAGCTGTTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCAAACAGGCTTGTAGTTACAAGTCCATCAATTGCCGTTGTGAACAAGTCTGGGTCTCCTTTGAATCCTGAGGAAATGCCAGAAGGGTTTCCATCTTCTAATATGGATATCTCAAATTCATCCCCAAAGCCAGACAAAGAGGATCCTCGTCCCTTATTGCAGTTTCATATTGTGCAGTTGCTTAAGAAGGCAGGATGGTCTATCGAGAAGCGTCAACGACCTTGCAGGCGTTACATGGAGTCAGTTTATAGGACACCGGAGGGAAAGCCTGTTCGGGAATTTACAAAAGCTTGGAGATTATGTGGTCAGCGCTTATTTGTTGAAAAATGCTATTTGATGTGTGGAGATTATAAGGAATGGACCGATATTGGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGAAAAAACAAAGACTCAGTCAGAGCCTGCTGTTATGCTGGCTCATCAATGGTGGCTGTTGGATCCTTTCGTAGTAGTTATATTTTTTAATAGAAAGATTGGTGCACTGAAAAAGGGAGAGGCAGTAAAAGCAACTTGGAGTTTAGTTTCTAGCAAGTATAAGATGGCATGTGCTCCCATTGATTCAGCTTGGGAGAACACTTCTGGTGCTCATTTTGATCAAAAACATGACCAAGCCTTTCTCTGTGATTCTTCTACAGCCGCTGGTACCACACTAACTGCTTCTTTGATTAACTACCATGCCTATAATCAGAAATCTGATGCTAAACAGGAAGATATGCATGTCATGCAACATAATCCTGACAGCATAGGAAATCAATGTAGATTGGATAGCAATGGTACCCAGTCAAGTGCTTCCTCTTTTGATATTCTTACAAGCTCTGGAAATTCAAACCAGGTACTTGGAGTGTCTAAAGTAAGTGCTGTTTATCAACCTAAAATTAGAGATTCCAAAAGCTTTGATAAACAGAGATCAGAAAATCATCTGGAAACAAATAAAAGAATCAGTGGAGATGTGCCAATGGACATGTCAGAGGAAAATAATGCACATGGTGTAAGCCATGGCATGGTTTGTCCTCATGATTCAGAGGCTATTCAACAGTCTGAATGTAGTGAGGAAGAAGGCAGGAAAATCTCAATAGCTTCTGTATTCAGAAAAGATTACACGTATGCTGTCACTAATGCTATTCCTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAACTGAGTATGTTATACCACAGTGACATGCTGGGCTCAACTGTTACTGACCAGATGCAGGCACTGAATGGTTATGCATTTGGTGCTCAGTCAGGGTCGGAAGAGGTCCGGGATTATCTAGTTGATGATGCAGGAAAAAAAAGAAACCACAGGTCTGTCAGTGTCCGGCAACATATTAGGAAAACAAACTACTCCATAACTGGATCAAACAAGTCCAATGGATGCCAGATTAAAGATGATGATCTATTGGTGTCAGCAATAATCAGGAATAAGGACTTGAGCCCAAAGACAATCCGAGGGAATTCTAGAGCTAAATCCTGCAAATCAAGGGGCTGGAGAAAGCTTAAAAGCCGAAAGGGCCATTGCAGGTTGCTACCAAGGAACCCTAGTAATGGAGGGAAGCACAATAAGGATGGCAAGAGGTATTATTTGGGGGCAAGGACACTCTTGTCCTGGTTAATTGAGAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAACCCAAAAGATAATTCTGTCACTAAGGATGGTAGGATCACCAAAGATGGTATTATTTGTAAGTGTTGTGGTAAGCTGCTTACACTATCAGAGTTCAAGTTTCATGCTGGGTTTACACTGAGCCGCCCCTGCTCGAATCTTTTCATGGAGTCTGGCGAGCCCTTTACACTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCAGAATCAAGCTGTGCCTGTTGATGATAATGATAGAAATGATGACTCCTGTGGGTTGTGTGGTGAGGGGGGCGAGCTGATATGTTGTGATAACTGTCCATCAACTTTTCACCTGGCTTGTTTGTCCACTCAGGAGATCCCCGATGGCAACTGGTACTGCACGAACTGCACTTGTCGGATATGTGGAGATTTGGTCATTGACAAAGAGGCTTCAGATGCATCTGATTCATTACAATGTTCACAGTGTGAACATAAATATCATGAGAAATGCCTAAGAGAAAGAGATAAACAAGAAGGGGTGGTTTCAGACACTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTGTACTCTGGTCTCCAATCTCAGGTGGGGTTAGTTACTCAAGTTGCTGATGGATTCTCATGGATGCTTCTCAGATGCATCCATGATGACCAAAAGGTTCATTCTGCCCAGTGGTTTGCCCTAAAGGCAGTGTGCAATACGAAATTATCTGTTGCCCTTACCATCATGGAGGAGTGTTTTTTGTCAATGTTGGATCCAAGAACCGGCATCCACATGATACCCCAAGTTCTATACAACTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACTGTGGTTTTGGAGAAACAGGATGTGTTAATATCTGTAGCATCTATCAGGGTGCATGGAAATACAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGTCAGGGAATGTGCCGACTCCTTGTGAGTGCAATTGAAGAGATGTTAACATCAATCAAGGTAGAAAAGCTTGTGATAGCAGCCATTCCTGATTTGGTGGAGACATGGACTAAGGGCTTTGGATTCATACCTGTAGGTGACATTGAAAAGCAAAGATTGAACAAAATCAACTTGATGGTTTTTCCTGGGACGGTGTTACTTGAAAAACCCTTGTACAGGAAGGAGAAAAATGAAGGACGATGTGAACAATCAACTTTGGCAACAGATAAATCAATCAAAGTATATATCAGTTCTGAAGGAATGGCCATAGCTGAATCATTGCCACAAGATGTTGAAAATGTAATCACGGAATGTGAACCTTTGGATGGCAAAAATCTAGACCATAAGGCTGGCAGTGAAACCAGTAGAGATGATAATATTCAAGCTGTTGATACTGCATTAGGAGCCAAAGAATCAACTGGAACAAGTAACTGTTTTAGAGAAGATCAGATCATCCACTTGAAGGTGTTGGGTGGCTCAGAGAAATCTATTGAAAACAATGTGCAGGAATTGAGCACAAGCAACAAGATGCAAATGGAAGGTGAGTTGGTACAACAATCTATTGAGAACTGTTGTGCTAAGAAAGATGGTGCTGAGTCGGGTGTAAGAATTATTGAGGACAAGAATTTCAAAATAGGTGAAGTTCAGGGAAATGCTTTGCATGGCCAGTTTTCAAACATGTCCTGCAAAACATTTTCGGGCAACAATTTTGACATGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCCAAGTCTGCAAGTTGA 4164 0.4099 MLDSNKIEDLYDDNFEGSNEERQIFKEIFSGNDNLQSSQRCLVSGVINFEHESTKNTFKSFGSSDENSVVLRPLSPRLSHPEEDLNLIQHSKETALGCMPESFIYGDQNDEDVNVKRMKFSLYELPCTRANSENVSSSSGLAKAVVSNPSVAATDCDNEHIAFRLVESSKHGVISNCYLLKRNMLQNNQAAKDDVDVTNCKLTTADRNVAKEVSVSKAVASPVSQESFANRLVVTSPSIAVVNKSGSPLNPEEMPEGFPSSNMDISNSSPKPDKEDPRPLLQFHIVQLLKKAGWSIEKRQRPCRRYMESVYRTPEGKPVREFTKAWRLCGQRLFVEKCYLMCGDYKEWTDIGQFWSDLSSALINVEKTKTQSEPAVMLAHQWWLLDPFVVVIFFNRKIGALKKGEAVKATWSLVSSKYKMACAPIDSAWENTSGAHFDQKHDQAFLCDSSTAAGTTLTASLINYHAYNQKSDAKQEDMHVMQHNPDSIGNQCRLDSNGTQSSASSFDILTSSGNSNQVLGVSKVSAVYQPKIRDSKSFDKQRSENHLETNKRISGDVPMDMSEENNAHGVSHGMVCPHDSEAIQQSECSEEEGRKISIASVFRKDYTYAVTNAIPKKKMRRKCKRVSEIKLSMLYHSDMLGSTVTDQMQALNGYAFGAQSGSEEVRDYLVDDAGKKRNHRSVSVRQHIRKTNYSITGSNKSNGCQIKDDDLLVSAIIRNKDLSPKTIRGNSRAKSCKSRGWRKLKSRKGHCRLLPRNPSNGGKHNKDGKRYYLGARTLLSWLIENGVISLNDVIQYRNPKDNSVTKDGRITKDGIICKCCGKLLTLSEFKFHAGFTLSRPCSNLFMESGEPFTLCLLQAWSAEYKARKSQNQAVPVDDNDRNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGNWYCTNCTCRICGDLVIDKEASDASDSLQCSQCEHKYHEKCLRERDKQEGVVSDTWFCGQSCQEVYSGLQSQVGLVTQVADGFSWMLLRCIHDDQKVHSAQWFALKAVCNTKLSVALTIMEECFLSMLDPRTGIHMIPQVLYNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGNTVAEMPLIATCSRYRRQGMCRLLVSAIEEMLTSIKVEKLVIAAIPDLVETWTKGFGFIPVGDIEKQRLNKINLMVFPGTVLLEKPLYRKEKNEGRCEQSTLATDKSIKVYISSEGMAIAESLPQDVENVITECEPLDGKNLDHKAGSETSRDDNIQAVDTALGAKESTGTSNCFREDQIIHLKVLGGSEKSIENNVQELSTSNKMQMEGELVQQSIENCCAKKDGAESGVRIIEDKNFKIGEVQGNALHGQFSNMSCKTFSGNNFDMDSNIECSVMYDETAFFGTFAKSAS* 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01245 1387 Gene3D - 1057 1170 - -
Rops7g01245 1387 MobiDBLite consensus disorder prediction 244 276 - -
Rops7g01245 1387 CDD PHD1_AIRE 886 925 - -
Rops7g01245 1387 Pfam Tify domain binding domain 808 858 IPR032308 -
Rops7g01245 1387 MobiDBLite consensus disorder prediction 536 553 - -
Rops7g01245 1387 Pfam PHD-finger 886 927 IPR019787 -
Rops7g01245 1387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 876 927 IPR013083 -
Rops7g01245 1387 PANTHER PHD FINGER FAMILY PROTEIN 2 1328 - -
Rops7g01245 1387 SMART PHD_3 885 926 IPR001965 -
Rops7g01245 1387 SMART PHD_3 927 981 IPR001965 -
Rops7g01245 1387 SUPERFAMILY FYVE/PHD zinc finger 872 927 IPR011011 -
Rops7g01245 1387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 928 984 IPR013083 -
Rops7g01245 1387 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1072 1159 IPR016181 -
Rops7g01245 1387 ProSiteProfiles Zinc finger PHD-type profile. 883 928 IPR019787 -
Rops7g01245 1387 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1036 1183 IPR000182 GO:0016747
Rops7g01245 1387 MobiDBLite consensus disorder prediction 536 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01245 Rops-Chr7 16829063 16838967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01245 1 409 PHD Transcription Factor Family AT3G14980 33.738 5.83e-50 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops7g01245 TDBD 3.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01245 - - lja:Lj3g3v1061160.1 2003.02