Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01222 ATGACTAAGACCACTACTTCTGGTGAAAAGAATGGATTGAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCACTGATTACATTCAGAAACATGGACATGGGAAATGGAGAACCCTTCCCAAGAATGCAGGACTAAAAAGATGTGGAAAGAGTTGTCGACTTCGCTGGGCTAACTACTTGAGGCCTGATATAAAGAGGGGAAAATTCTCATTAGAAGAAGAAGAAGCCATCATCCAGTTGCACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAATACCCACATCAAGAAAAAGCTATTGAATATGGGAATTGATCCAGTGACTCACACACCACGCTTTGATGTTCTACAACTAGCCTCCATTTTGAACTCATCTTTATACAATTCAACCCAATTTAACTACCCTGGTCTTTTTGAGATGGGAAGAGTGGCAAATCCAAACCAGATGCAGCTGCTAAGTTTGCTCACCACTCTACTATCATGTCAAAACAGAATCCCAGATGTTTCAAATAATAATTACCTGCAAAACCAACTTGGTTGTAGCCCTTTATTGCAAAATCAATCCCAATACTCCCAACCAATGCAACTTGATTCTATCCAAGCCTTTCAACCAAATCAGCACCATTTAGCAGTTCAAGAAAACCACTGTACTACATCTAGTCCATTGCATATGGAATCCCAACTCATGAAAACAAAACTAGAGCATCAAATCTCTCCAATTTCTACTACTTTTAGCCACCAAAACATTCTACCAAATTTGTGGCAGTATAATGGAGGTCACATATCAGATCAACAACAACAGCCAGAATCATCAGCTACACAATGTTTATCTTCCCCCAAGTTCAACTCCATCATCAACAATCTCTTGGAAAATCAGGTTTTAAGTAACAACGAGGGAATGCCAAATTTCAATTTAAGCTCACTGTTATCATCCACACCTTCATCTTCTAGCCCGAGTACTTTGAATTCATCATCTTCCACGACATTTGTCAATGGAAACACTGAAGATGAAAGGGACACTTATGGTAGCAACATGTTCATGTATCACATCTCAAATGGCTTGAATGACCCTGGACTTCTCTGA 1137 0.3958 MTKTTTSGEKNGLKKGPWTPEEDQKLTDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLNMGIDPVTHTPRFDVLQLASILNSSLYNSTQFNYPGLFEMGRVANPNQMQLLSLLTTLLSCQNRIPDVSNNNYLQNQLGCSPLLQNQSQYSQPMQLDSIQAFQPNQHHLAVQENHCTTSSPLHMESQLMKTKLEHQISPISTTFSHQNILPNLWQYNGGHISDQQQQPESSATQCLSSPKFNSIINNLLENQVLSNNEGMPNFNLSSLLSSTPSSSSPSTLNSSSSTTFVNGNTEDERDTYGSNMFMYHISNGLNDPGLL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01222 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops7g01222 378 SMART sant 14 64 IPR001005 -
Rops7g01222 378 SMART sant 67 115 IPR001005 -
Rops7g01222 378 Gene3D - 14 67 - -
Rops7g01222 378 Gene3D - 70 117 - -
Rops7g01222 378 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops7g01222 378 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Rops7g01222 378 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Rops7g01222 378 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Rops7g01222 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 292 - -
Rops7g01222 378 FunFam MYB-related transcription factor 14 67 - -
Rops7g01222 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Rops7g01222 378 MobiDBLite consensus disorder prediction 327 354 - -
Rops7g01222 378 CDD SANT 70 113 IPR001005 -
Rops7g01222 378 MobiDBLite consensus disorder prediction 1 23 - -
Rops7g01222 378 FunFam Transcription factor MYB39 70 131 - -
Rops7g01222 378 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Rops7g01222 378 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01222 Rops-Chr7 16515413 16517406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01222 9 378 MYB Transcription Factor Family AT4G21440 45.288 7.30e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g01222 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01222 K09422 - gmx:100820398 528.865