Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01213 ATGCTTTCTAATATCTGCTTGATCAGAAGGCATATTCCACATACACGGGGTTGGGGTCAGGCAAGGGAAAATGAACTTGAAACCAGAACTTTTGAGGGATTGCTAATTACATTTGGAAATGCTTGCACTATCAGAAACAACAGTAGTTTAAACAAGAATATGATGTTAGCTTCAGTTGCAATGTCGTGCTTAAAAATGGTGACTAATGATATTCTTCATCTGTCAGATCATGTTGAGGTTGATGGCCATGGGAACATCAACAAAAAAGAATTAGTAGGAATAACAGTCGGTTCATTCATATTAAACATGGGAATGGCTTTGATAATTTTTGGATTATGTGTATGGAAAAGGAAATTTCAAAAGCCAGGGCTAACAAATATACTTAAAAAGAATAATTACTACAATAAACTAAAGAAGGAAGACCTAGACCTACAGACATTTGATTTGTCAGTCATAGCAAAAGCCACTGATAATTTTTCAAGCACCAACAAACTGGGAGAAGGTGGCTTTGGATCAGTATATAAGGGTATTCTAACAGATGGACAAGAGATAGCAGTGAAAAGGCTGTCTCACAATTCTGGTCAGGGTTTCGAGGAATTCAAAAATGAGGTTGTGTTGATTGCCAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGCTGCATTGAAGGAGAAGAGAAAATGTTGATCTATGAATACATGCTTAACAAAAGCTTGGACTACTTTATTTTTGATGAAACTAGAAGAAAGATTATGGATTGGCATAAACGATTCTATATCATTGATGGCATTGCTCGTGGACTTCTTTATCTTCATCAAGATTCAAGACTCAGGATTATTCATAGAGATTTAAAAACCAGCAATATCTTACTAGATGCAAATTTGAATCCAAAAGTATCAGATTTTGGTCTGGCTCGCACATTTTGGGGAGATCACTTTGAGGCCAAAACAAACAGGATTGCTGGCACTTATGGTTACATGCCTCCTGAGTATGTTATGCATGGGCATTTCTCCATGAAATCCGATGTCTTCAGTTTTGGTGTAATAGTACTAGAGGTAGTTAGTGGGAGGAGGTCCTGTGGATTTTCAGACCCAGAACACTCCCTTAGTCTTCCAGGACACGCATGGACACTATGGACTGAAGGGAGGCCCTTGCAACTAGTGGATGAAGTTTTGGGAGAAATATGTTCTTCAGATGAAGTCATACGGTATATACAAGTTGGGTTGTTATGCGTGCAACAAAGACCAGAAGATAGACCAGACATGTCATCAGTGGTTCTGATGTTGAATGGCGAGAAATCATTGCCCAGGCCAAAGGTTCCTGCATTTTACAATAAAAGGGATGCACCCGAAGAAAATTCCTTGTCTGGAAAATCCAAACTGTTCTCAAAAAATGATACTTCTATCACAGTTTGA 1419 0.3848 MLSNICLIRRHIPHTRGWGQARENELETRTFEGLLITFGNACTIRNNSSLNKNMMLASVAMSCLKMVTNDILHLSDHVEVDGHGNINKKELVGITVGSFILNMGMALIIFGLCVWKRKFQKPGLTNILKKNNYYNKLKKEDLDLQTFDLSVIAKATDNFSSTNKLGEGGFGSVYKGILTDGQEIAVKRLSHNSGQGFEEFKNEVVLIAKLQHRNLVKLLGCCIEGEEKMLIYEYMLNKSLDYFIFDETRRKIMDWHKRFYIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLNPKVSDFGLARTFWGDHFEAKTNRIAGTYGYMPPEYVMHGHFSMKSDVFSFGVIVLEVVSGRRSCGFSDPEHSLSLPGHAWTLWTEGRPLQLVDEVLGEICSSDEVIRYIQVGLLCVQQRPEDRPDMSSVVLMLNGEKSLPRPKVPAFYNKRDAPEENSLSGKSKLFSKNDTSITV* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01213 472 Gene3D Transferase(Phosphotransferase) domain 1 235 440 - -
Rops7g01213 472 SMART serkin_6 159 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01213 472 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524
Rops7g01213 472 Pfam Protein tyrosine and serine/threonine kinase 162 427 IPR001245 GO:0004672|GO:0006468
Rops7g01213 472 MobiDBLite consensus disorder prediction 441 472 - -
Rops7g01213 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Rops7g01213 472 ProSiteProfiles Protein kinase domain profile. 159 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01213 472 MobiDBLite consensus disorder prediction 457 472 - -
Rops7g01213 472 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 57 460 - -
Rops7g01213 472 SUPERFAMILY Protein kinase-like (PK-like) 144 430 IPR011009 -
Rops7g01213 472 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 124 234 - -
Rops7g01213 472 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 235 438 - -
Rops7g01213 472 Gene3D Phosphorylase Kinase; domain 1 132 234 - -
Rops7g01213 472 CDD STKc_IRAK 165 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01213 Rops-Chr7 16354858 16358961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01213 127 445 Receptor kinase-like Gene Family AT4G11480 55.657 8.12e-126 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops7g01213 PK_Tyr_Ser-Thr 8.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01213 - - pcin:129299332 544.273