Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01195 ATGAGACAAAGTGGTGCATATTCAAGGTTGCTTTGTGGTGGCATATCAGGAAGGACAGGTCCTCACTCTCTACCCTTGGCAAGGATCAAGAAGATCATGAAGAAATCTGGGGAGGATGTCAAGATGATATCAGGGGAAGCTCCCATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCATGGATTATGGCCATGCAAGGCAAAAGGAGAACTTTGCATAAAGACGATGTGACCTCTGCTGTTATAGCCACTGATATCTTTGACTTTTTGATCAATTTGGTTTCCAATTCTAGTAGCCCTTTAGTTGATGGTGCTGCTGCCACTGACACCACTGTCATGTAA 360 0.4361 MRQSGAYSRLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIIFSKACELFIEELTRRSWIMAMQGKRRTLHKDDVTSAVIATDIFDFLINLVSNSSSPLVDGAAATDTTVM* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01195 119 FunFam Nuclear transcription factor Y subunit C-3 15 101 - -
Rops7g01195 119 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Rops7g01195 119 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
Rops7g01195 119 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Rops7g01195 119 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01195 Rops-Chr7 16048536 16048895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01195 22 100 CCAAT-HAP5 Transcription Factor Family AT3G48590 67.089 4.42e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops7g01195 CBFD_NFYB_HMF 1.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01195 - - gmx:100777614 193.741