Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01191 ATGGCAGATGATCAATTTCAGACAAGTGGAAACTGGTGGGACTCAGCAAGAAACGTAAGGTTTGATAGTGGGGCATCACAGTCTTCTTCTTCTTCTGGCATCACCAACATAGGAAACTTTGCTTGGCAACCTCAAGATATGGTAGACATGAAGCCAAGGTCGTCCATGGATTCCTCTTCTTCTGTGGTTTTCCATGACACTCAGAAGCTTCAACCCACAGATTCTGTCAGTTCCAGTGACCCCAATTTGCATATGATGGGTTTAGGCCTTTCATCTCAAGCCATGGATTGGAATCAAGCATCATTGTTACGAGGTGAAAAGGGTACAGAGAACAGTTTCAGGTCGATGCTGCAAGAGAATTTGAACTCATCAAGAACCAATTTTCAGCAAGAAACTGGGATGGGGTTGTCTCAAGTTCAATGGAGGTCAGAAAAGTTGTTCCCTTCAGAATCTTCAACCAATGAATTCAGGCAAGTGAATAGGGGTTTCTCTTTGGATCAAAACCAATTTAGTCCTGGTGACAGCACTGTTACATGCCAAGGCTTACCCTCAACTTTTCAGATAGATTCCTATGGGAACCCATCACTATTACCAGGATTATTAGGACCTGACACTAACCAACCACACCCCATGAATTTTCCATACCCAACAAGCTATGGATCAAACTCTAATGACTTGATGCCTTCTTGGTCTAAAGGTCCTCAATTCTTGAGAGCTTCACCTCCAAAACAACCACCTAATAACCAGTTACATTTCACCAACAACGCACCTTTTTGGAATGCTTCTGAGGCTGCTTCCATCAAAGATGTTCGGTCCAACTTCTTCCCCTCGTTGCAACCCCCATTTTCAACACCAAATTTTGATGTACAGTCAAAGAATATATCTGAAGCTAGGGACCCAAGTGCTGTGGGAAAGAAAAGTGGGAGTGAGCCAGCACCCAAAAGACCCCGTAACGAAACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTAGTGTCGCCTTTTGGAAAGACTGACACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAGGTTACAGTTTTAAGCACCCCGTATATGAAAAGTGGAGCTCCAATTCAGATTCAACAGAGTTCTGGAAAATCTAAGGAAACTGAGGGTCCAAAGCAGGATCTTAGAAGTCGAGGGCTGTGCTTGGTGCCGGTTTCAAGTACGTTTCCAGTGACTCATGAAACCACAGTTGATTTTTGGACACCAACATTTGGAGGGTCTTCAAGATAA 1317 0.4396 MADDQFQTSGNWWDSARNVRFDSGASQSSSSSGITNIGNFAWQPQDMVDMKPRSSMDSSSSVVFHDTQKLQPTDSVSSSDPNLHMMGLGLSSQAMDWNQASLLRGEKGTENSFRSMLQENLNSSRTNFQQETGMGLSQVQWRSEKLFPSESSTNEFRQVNRGFSLDQNQFSPGDSTVTCQGLPSTFQIDSYGNPSLLPGLLGPDTNQPHPMNFPYPTSYGSNSNDLMPSWSKGPQFLRASPPKQPPNNQLHFTNNAPFWNASEAASIKDVRSNFFPSLQPPFSTPNFDVQSKNISEARDPSAVGKKSGSEPAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQIQQSSGKSKETEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGSSR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01191 438 CDD bHLH_AtbHLH_like 324 375 IPR045239 -
Rops7g01191 438 FunFam Transcription factor bHLH123 family 328 390 - -
Rops7g01191 438 MobiDBLite consensus disorder prediction 384 404 - -
Rops7g01191 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 127 419 - -
Rops7g01191 438 Gene3D - 328 386 IPR036638 GO:0046983
Rops7g01191 438 MobiDBLite consensus disorder prediction 295 326 - -
Rops7g01191 438 MobiDBLite consensus disorder prediction 52 82 - -
Rops7g01191 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 367 IPR011598 GO:0046983
Rops7g01191 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 383 IPR036638 GO:0046983
Rops7g01191 438 SMART finulus 329 373 IPR011598 GO:0046983
Rops7g01191 438 MobiDBLite consensus disorder prediction 49 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01191 Rops-Chr7 15977067 15980509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01191 104 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.449 5.74e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01191 - - gmx:100778697 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01191 7 15977067 15980509 Rops7g01191 7 15977067 15980509 ECH