Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01189 ATGAATAATGGTTTCTTTGATTTTACAGTGATAGTCTTTTGTCTCATTGGGAACTCAGCAGTTGCCTTGCCGCCTTATTTCTCCACACTCACACCACAGAGCGATCCAACACCACTCAACAGCTACAAGGGTTTGAACAGTGAGATGGGGATTAAGGCAAAAAAGAAAGCTTTGAATAAGAGTTTGAGAAAGGCCACTGCTAATAAGCCATCTGAGGGTGCTGATTTTCTGCCCTTGGAAGGTGGTCCTGCTCGCAAACTTCCCGAACAGAAACCTCTGGAGAACACTTCCACCGTTTTGTATGTGGGTCGGATTCCACATGGGTTTTATGAGAAGGAGATGGAAGGTTTCTTTGGACAATTTGGAGCTATCAAGAGAATGAGAATTGCTAGAAATAAAAAGACCGGGAAATCAAGACATTTTGGGTTCGTAGAGTTTGAATCTCCTGAGGTGGCAAAAATTGTAGCTGATACTATGCACAATTATCTACTCTTTGAACACCTTCTCCAGGTTCATGTGATACCTCCAGAGCATGTTCATCCTAAACTATGGAGAGGATTCAATTACCGTTACAAGCCAGTGGATTCACTCCAAATTCAACGTGAGCAACATGACAAGGAAAGAACATTGGAAGAGCACAAGAAGTTGGTGGAAAAGATTCTGAAACGTGACAAAAAACGACGTAAAAAGATAGAGGCTGCTGGAATTGATTATGAATGCCCTGAGATTGTCGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGAAGATTAA 777 0.4183 MNNGFFDFTVIVFCLIGNSAVALPPYFSTLTPQSDPTPLNSYKGLNSEMGIKAKKKALNKSLRKATANKPSEGADFLPLEGGPARKLPEQKPLENTSTVLYVGRIPHGFYEKEMEGFFGQFGAIKRMRIARNKKTGKSRHFGFVEFESPEVAKIVADTMHNYLLFEHLLQVHVIPPEHVHPKLWRGFNYRYKPVDSLQIQREQHDKERTLEEHKKLVEKILKRDKKRRKKIEAAGIDYECPEIVGNIQPAPKKIKFED* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01189 258 SMART rrm1_1 99 172 IPR000504 GO:0003723
Rops7g01189 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Rops7g01189 258 Gene3D - 51 173 IPR012677 -
Rops7g01189 258 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 54 257 - -
Rops7g01189 258 MobiDBLite consensus disorder prediction 62 89 - -
Rops7g01189 258 SUPERFAMILY RNA-binding domain, RBD 97 243 IPR035979 GO:0003676
Rops7g01189 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 167 IPR000504 GO:0003723
Rops7g01189 258 Coils Coil 199 219 - -
Rops7g01189 258 CDD RRM_NIFK_like 99 172 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01189 98 171 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 6.79e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01189 K14838 - gmx:100814276 357.066