Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01179 ATGTATCATCATAGTATGGATTCGCAGCAGCTTTTCAGTTTCAGTGTAACTAGTGCAGGATTACCTTACATGTCATCTTTTCCCACCAAACCATCTCTACCCAACAGGTTGCTTGGATCCTTGAAAGTTGACTATGGAAACTCACCTAACTCACCCTTTTCCACTCCTTTTGATTCTGACACTCTTTCTGCATTGAGTGGTAGCCCGGAGCAACACAGCTCAGGAGAAATCCTCTCTGGTTTCAGTCCCTCTGGTAACTCTTCACTAGAAACCAGCCATTATATGCATGGATCTATGTCACCATTGGTGGACAATCTCGATGACAGTTTGCAACTATATTCTGCTAGGAGCTCTCTTCTACAGAATGCAAGTTGTAACCAGAAAATCAGACATGCATTGCTGGAACTAGAAACTGCTTTGATGGCCCCTGATGATAATGAAGTTACCACATCTAATACTTCATTGACTGAGAGCACCAGGCCAACAACATCTGGCCAGAAATATAGGTCCTGGAGTAATGAGCTCCAGGGGTCACGATATATTCAAAGTCAACCATCACATGTTACCAGCAGTAGGCAGTCAAATGAAGTTGTACATACAGAGAAACGGCAAAAGTTGATGGAGGAAGAACCCTTGGTACAAGGGTTCCCATCAAGCAATTTGAAGCAATTGCTGATTGCATGTGCCAGAGCCATGTCTGAAAACAACATGAAAGATTTTGATCAATTGATAGAAAAGGCTAGAAATGCTGTGTCTATCAATGGGGAGCCAATCCAGCGGATTGGTGCTTATATGATAGAAGGGCTTGTTGCAAGGAAGGAAGCATCAGGGAATAGCATCTATCATGCCCTCAATTGCAGAGAGCCTGAAGGCAAAGAATTACTCTCTTACATGCAATTGCTTTTTGAAATCTGCCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCTGAAGCATGCAGAAATGAGGATCACATACACATCATAGACTTTCAGATTGCTCAGGGATCTCAATGGATGACTCTTCTTCAAGCTCTTGCAGCAAGACCTGGTGGAGCTCCCCACGTGCGGATCACGGGGATTGATGATCCTGTTTCCAAGTATGCTCGTGGGGATGGATTGGAGGTAGTTGGGAAAAGATTGGCCTTGATGTCTGAGAAATTTGGCATCCCAGTGGAGTTTCATGGGATGCCTGTTTTTGCTCCAGATGTGACAAGAGATATGCTTGATATCAGGCCTGGAGAGGCTTTGGCTGTGAATTTTCCCTTGCAACTCCATCATACAGCTGATGAGAGTGTTGATGTGAGTAACCCAAGGGATGGAATTTTGAGATTGGTGAAGTCTCTTTCTCCCAAGGTGGTCACACTGGTGGAGCAAGAATCAAACACAAACACAACTCCTTTCTTCAACAGATTTATAGAAACCTTAGATTACTACTTGGCAATCTTTGAGTCCATTGATGTCACCCTCCCAAGAAATAGCAAGGAGAGGATTAATGTGGAGCAACATTGTCTGGCACGGGATATTGTGAATGTTATTGCTTGTGAAGGCAAGGAAAGGATAGAGCGACATGAACTGTTTGGCAAGTGGAAGTCAAGGTTATCAATGGCTGGCTTCCGTCAATGTCCTTTGAGTTCTTATGTCAATTCTGTTATAAGAAGCCTTCTCAGGTGCTATTCAGAACATTATACACTAGTGGAGAAGGATGGTGCCATGTTGTTGGGATGGAAGAACAGAAATTTGATATCTGCTTCAGCCTGGCATTAA 1776 0.4358 MYHHSMDSQQLFSFSVTSAGLPYMSSFPTKPSLPNRLLGSLKVDYGNSPNSPFSTPFDSDTLSALSGSPEQHSSGEILSGFSPSGNSSLETSHYMHGSMSPLVDNLDDSLQLYSARSSLLQNASCNQKIRHALLELETALMAPDDNEVTTSNTSLTESTRPTTSGQKYRSWSNELQGSRYIQSQPSHVTSSRQSNEVVHTEKRQKLMEEEPLVQGFPSSNLKQLLIACARAMSENNMKDFDQLIEKARNAVSINGEPIQRIGAYMIEGLVARKEASGNSIYHALNCREPEGKELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDHIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLALMSEKFGIPVEFHGMPVFAPDVTRDMLDIRPGEALAVNFPLQLHHTADESVDVSNPRDGILRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLPRNSKERINVEQHCLARDIVNVIACEGKERIERHELFGKWKSRLSMAGFRQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWH* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01179 591 Pfam GRAS domain family 221 590 IPR005202 -
Rops7g01179 591 MobiDBLite consensus disorder prediction 144 169 - -
Rops7g01179 591 MobiDBLite consensus disorder prediction 52 89 - -
Rops7g01179 591 ProSiteProfiles GRAS family profile. 212 591 IPR005202 -
Rops7g01179 591 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 196 587 IPR005202 -
Rops7g01179 591 Coils Coil 230 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01179 Rops-Chr7 15652929 15656471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01179 113 590 GRAS Transcription Factor Family AT5G48150 52.263 5.06e-175 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops7g01179 GRAS 3.7e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01179 - - gmx:100799073 954.51