Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01178 ATGAAAGGGGAGTCTGTAGGAATAATCATTGGGATTTCCATAGGTGTGGTGATTGGAGTTGTTTTGGCAATTTCTGCATTGTTGTGTGTTAGATACCATAGGAAGCGTTCACAAATAGGCAATAGCAGTTCCCGGAGGGCAGCTACCATACCTATCCGTGCAAATGGTGCTGATTCATGTACCATTCTTTCAGATTCAACCTTAGGTCCAGATTCACCTGTAAGGTCCGGACGTAATGGCATGTCCTTCTGGCTTGATGGATTCAAGAAGAGTAGCATGGTTTCAGCATCTGGAATACCAGAATATTCATACAAGGACTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGTGAGACTGTTGCAGTTAAAGTTCTCGCAACTAATTCTAAACAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTATTGGGAAGGTTACACCATAGAAATCTGGTCAATTTGGTCGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTATAATGAAGAGAATGGGGTGCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGATGTAGCAAGGGGTGTGGAGTATCTTCATGATGGGGCTGTTCCTCCAGTAATTCATCGAGATATCAAACCTTCCAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTCGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGTACCTTTGGCTATCTAGACCCTGAGTATATATCTTCAGGGATATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAACTTATAGCTGGCCGAAATCCTGAGCAGGGTCTTATGGAATATGTTGAGCTTGCAGCAATGAATACTGAGGGGAAAGTTGGTTGGGAAGAGATTGTTGATTCTAGGCTTGAGGGGAAATGTGATTTCCAAGATCTCAATGAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCAAAGAAGCGCCCTTCCATGAGGGACATAGTGCAAGTTTTGACAAGGATCCTTAAATCAAGGCACCATAAGAATCATCATCACAAGAAGTCCCTTTCAGCCACAGCAGAAGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGACTTCTGTTACTGACCACAGAAGAGAAGCATCTATAGATAGTGCAGCTGACATAAATGACACTCCAAAATTTGTATAA 1305 0.4268 MKGESVGIIIGISIGVVIGVVLAISALLCVRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPDSPVRSGRNGMSFWLDGFKKSSMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYNEENGVLGWDLRVHIALDVARGVEYLHDGAVPPVIHRDIKPSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGIFTKKSDVYSFGVLLFELIAGRNPEQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQDLNEVAALAYKCINRAPKKRPSMRDIVQVLTRILKSRHHKNHHHKKSLSATAEEVSIDVDQLETKTSVTDHRREASIDSAADINDTPKFV* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01178 434 Pfam Protein tyrosine and serine/threonine kinase 114 374 IPR001245 GO:0004672|GO:0006468
Rops7g01178 434 PANTHER OS01G0750732 PROTEIN 3 401 - -
Rops7g01178 434 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 187 - -
Rops7g01178 434 Gene3D Transferase(Phosphotransferase) domain 1 188 403 - -
Rops7g01178 434 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01178 434 CDD STKc_IRAK 118 377 - -
Rops7g01178 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Rops7g01178 434 Coils Coil 389 409 - -
Rops7g01178 434 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01178 434 SUPERFAMILY Protein kinase-like (PK-like) 101 394 IPR011009 -
Rops7g01178 434 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 397 - -
Rops7g01178 434 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01178 Rops-Chr7 15617812 15622814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01178 102 374 Glycoside Hydrolase AT3G07070 45.517 1.56e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Rops7g01178 PK_Tyr_Ser-Thr 2.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01178 - - gmx:100799586 766.533