Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01161 ATGGTTTCCCCGGAAAACAGCAATTGGCTCTTCGATTACTCCTTGATCGACGATGATATTCCCGATGCCTCCTTCGCCGTCCCTGCTTCTGCCTTCACCTGGCCCACCTCCAATGTCGGTGTTGAAATTGATGGCTCGCTGGGGGATTCTGATGGTCTCAAAGATCCTGGTTCAAAGAAGAGGGGTAGATCTGATTCATGTGCTGCTTCTGGCTCTAAAGCATGTCGAGAGAAGTTACGGAGGGATAGGCTGAATGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAAGACTCCCAAAACAGACAAGGCTGCTATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGGGGTGAAGCCCAGAAGTTGAAAGACTCAAACACAAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGCAGCAAGTGAAATCAATGAATGCCCCACCTAGTTTCATGACACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAGTTGGTGCCTTTTATTGGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCGCGGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 690 0.4913 MVSPENSNWLFDYSLIDDDIPDASFAVPASAFTWPTSNVGVEIDGSLGDSDGLKDPGSKKRGRSDSCAASGSKACREKLRRDRLNDKFVELGSILEPGKTPKTDKAAILIDAVRMVTQLRGEAQKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKSMNAPPSFMTPPPAIPAAFAPQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01161 229 SMART finulus 74 125 IPR011598 GO:0046983
Rops7g01161 229 MobiDBLite consensus disorder prediction 45 71 - -
Rops7g01161 229 Pfam Helix-loop-helix DNA-binding domain 72 119 IPR011598 GO:0046983
Rops7g01161 229 Coils Coil 116 171 - -
Rops7g01161 229 CDD bHLH_AtILR3_like 73 148 - -
Rops7g01161 229 FunFam Transcription factor bHLH104 71 152 - -
Rops7g01161 229 Gene3D - 59 117 IPR036638 GO:0046983
Rops7g01161 229 CDD bZIP 134 166 - -
Rops7g01161 229 Gene3D arf6 gtpase in complex with a specific effector, jip4 118 171 - -
Rops7g01161 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 143 IPR036638 GO:0046983
Rops7g01161 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 119 IPR011598 GO:0046983
Rops7g01161 229 PANTHER BHLH TRANSCRIPTION FACTOR 4 229 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01161 Rops-Chr7 15505863 15509525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01161 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.849 5.98e-118 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g01161 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01161 - - ccaj:109815088 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01161 7 15505863 15509525 Rops7g01161 7 15505863 15509525 ECH
Rops7g01161 7 15505863 15509525 Rops3g01656 3 25916902 25921470 PCT