Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01088 ATGAACCCTTCTTCTTCAAAATCTGCTCACAAGACAAGGTTCCCCGTTGAAGTTGCTGTAATCAACGCTCCTGAAATGCACGGACAGGCTCTGTTGCCTGCATCGTTTAGTTCTCAGTTTGGAGGCAAAGTTGGGCCTACCGCATTTATCACTACCAGCAATGGCAAATTATATACAGTGGAATTTAGGAACAGTCTACTGGGAGCCTTCTTTTCAAGGGGTTGGAGTGATTTCGTCAATGAAAACTCGTTGAATACACAACGACGTGTTATTTTGAAATACGTTGGTGAATCCTCTTTCAGGATGAGTCATAAGGACCAAACTGATCGACAACAAACCACTCATAATCGTCGTAAACACGACATCTCACTTACTGAATACAGCATAAATAACACACAGCATCTTCCAGTTGGTCTCATACAATATCTTAACGTCAACTTAAATCAACTCACATTGCAAGTTGTTGATGGTCGCACTTGGGATTGTCTTGTATACCAATCCACAAACAACTCTAGGGCGCTTAGGATTAGTTCGGGCTGGAAAGAATTTGCGATGCACATGCAGCTAACCACTACCACTCATGTACAATTTGAAGTCCTTGATGGAGAACGTAACTTGGTTTTTGTCCATATTGATATACGTCCTCCTATGGCACCTCCGTTTCTGTGGTTTCGTTCTTTGCTTGGGGTGTTTTTGAGGTTACAGTGTGGAGGTCCTCCCTGCGATTTTTACCCCTCATCCATGCCTCCATGCACTTACAAAGCTGCAACAGATCAAGACGCCGGCGGCGGGGTGAACCCCATCCACGAACTGTCAAACCCTAATGGAAGACTTTATAGGCTATGCAAGGCATCCTTTTCACCAGATGGACCCGTGTCAGAAGAAGCTGTTAAGAAAGTTCGGGAGAAGTTAGAAAAAATCAAGCCATCAGATGTAGGTCTTGAACAGGAGGCCCAAGTAGTTCGTAATTGGTCTGGTCCAATGCCTGAATGTAATGGGAACCATCAATCGCCACCACCAATCAAATACTTGCATTTGCATGAATGTGACAATTTTTCTATAGGTATTTTTTGTATGCCTCCCTCATCTGTTATTCCTCTCCATAATCATCCTGGAATGACAGTATTAAGCAAGCTCTTATATGGTTCAGTTTATGTTCAATCCTATGACTGGATCGATTTCCCTGGCCCAACCGATCTATCTGAAGCTAGAGCTGCAAAGCTTGTCAAAGATACAGAGATGACAGCACCAAGTCCAACAACAGTTCTTTATCCTACCATTGGAGGAAATATACATTATTTTCGGGCCATAACTCCTTGTGCAATCTTTGACATATTATCTCCACCATACTCTTCAGAACATGATAGACACTGCACTTACTTCCGGAAATCCCAAAGGAAAGGTCTTCCAGGTAATATTCCGTTGAATGGAGTTTCAGTTTCTGAGGTGACTTGGTTAGAAGAATTTCAACCTCCTGATGACTTTGTGATCCGGAGAGGGCAGTACAGGGGTCCAGTTATTAGACCTTTTTAA 1533 0.4299 MNPSSSKSAHKTRFPVEVAVINAPEMHGQALLPASFSSQFGGKVGPTAFITTSNGKLYTVEFRNSLLGAFFSRGWSDFVNENSLNTQRRVILKYVGESSFRMSHKDQTDRQQTTHNRRKHDISLTEYSINNTQHLPVGLIQYLNVNLNQLTLQVVDGRTWDCLVYQSTNNSRALRISSGWKEFAMHMQLTTTTHVQFEVLDGERNLVFVHIDIRPPMAPPFLWFRSLLGVFLRLQCGGPPCDFYPSSMPPCTYKAATDQDAGGGVNPIHELSNPNGRLYRLCKASFSPDGPVSEEAVKKVREKLEKIKPSDVGLEQEAQVVRNWSGPMPECNGNHQSPPPIKYLHLHECDNFSIGIFCMPPSSVIPLHNHPGMTVLSKLLYGSVYVQSYDWIDFPGPTDLSEARAAKLVKDTEMTAPSPTTVLYPTIGGNIHYFRAITPCAIFDILSPPYSSEHDRHCTYFRKSQRKGLPGNIPLNGVSVSEVTWLEEFQPPDDFVIRRGQYRGPVIRPF* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01088 510 CDD B3_DNA 32 99 IPR003340 GO:0003677
Rops7g01088 510 Pfam PCO_ADO 304 507 IPR012864 GO:0016702
Rops7g01088 510 Pfam B3 DNA binding domain 27 104 IPR003340 GO:0003677
Rops7g01088 510 Gene3D Jelly Rolls 294 471 IPR014710 -
Rops7g01088 510 CDD cupin_ADO 350 451 - -
Rops7g01088 510 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Rops7g01088 510 Gene3D - 9 106 IPR015300 -
Rops7g01088 510 SUPERFAMILY DNA-binding pseudobarrel domain 28 104 IPR015300 -
Rops7g01088 510 SUPERFAMILY RmlC-like cupins 277 466 IPR011051 -
Rops7g01088 510 Gene3D - 107 214 IPR015300 -
Rops7g01088 510 SUPERFAMILY DNA-binding pseudobarrel domain 134 211 IPR015300 -
Rops7g01088 510 PANTHER UNCHARACTERIZED 277 506 IPR012864 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01088 Rops-Chr7 14490298 14504801 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops7g01088 PCO_ADO 1.3e-71 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01088 K23953 - gmx:100804362 438.728