Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01059 ATGGAAATGGAAGCTTTTGGGAGGATCAGTGATGGTTTTCAAGTTAGTTCAGGTGTAATTGGAAGTGGGTATGCTTCATCTTCATCTTTGGTTTTGGATAGGGAGAAGGGACAGCTTGTGGAAGCTCCTGTGAAGTTGGAACGCAAGGGTGTGTTACCTGAGAGAAGTCTTGAAGCCTTGAAGAACCATAGTGAGGCAGAGAGGAGGAGGAGAGCAAGAATTAATGCACATCTTGATACCCTTCGCAGTGTGATTCCAGGTGCTATGAAGTTGGACAAAGCATCCTTACTGGCTGAGGTTATTAGACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCTAGTGAAGGGTTAATGATTCCAAAGGACAATGATGAAATAAGAGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTCCCTTATTCAATAAGAGCATCACTATGTTGTGAATATAAACCTGGGTTATTATCTGATATAAGACAAGCACTTGATGCTCTTCATCTTATGATAATAAGGGCAGAGATTGCAACCTTAGGAGGCAGAATGAAGAATGTTTTTGTGATAATTAGCTGCAAAGAACAGAACTTTGAAGATGCTGAACACCGTCAGTTTCTAGCTGGCTCAGTTCACCAAGCTCTTAAATCTGTACTTGATAGATTTTCTGTTTCACAAGATGTCTTAGAAACCAGAAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTGTGA 744 0.4019 MEMEAFGRISDGFQVSSGVIGSGYASSSSLVLDREKGQLVEAPVKLERKGVLPERSLEALKNHSEAERRRRARINAHLDTLRSVIPGAMKLDKASLLAEVIRHLKELKTNAAQASEGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIIRAEIATLGGRMKNVFVIISCKEQNFEDAEHRQFLAGSVHQALKSVLDRFSVSQDVLETRKRRRISIFSSSSLGDFL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01059 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 107 IPR011598 GO:0046983
Rops7g01059 247 Pfam Helix-loop-helix DNA-binding domain 62 107 IPR011598 GO:0046983
Rops7g01059 247 Gene3D - 54 116 IPR036638 GO:0046983
Rops7g01059 247 SUPERFAMILY ACT-like 146 223 IPR045865 -
Rops7g01059 247 PANTHER TRANSCRIPTION FACTOR BHLH30 24 239 IPR045847 GO:0003700|GO:0006355
Rops7g01059 247 SMART finulus 64 113 IPR011598 GO:0046983
Rops7g01059 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01059 Rops-Chr7 14065510 14067620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01059 45 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.837 1.73e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g01059 HLH 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01059 - - gmx:100783322 405.216