Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01050 ATGTCATTATCAAAGGCTTCAAAAGGCGTGGAAGCATCAACGCGCTCTCATAGGCCAAAGGTTTTTGATTTTTTGGGATCAGCAGCAGTGGCAGAGAAATTAAGAAACCAAGAGAGAAAAGAAGGCCACAGAAAGATAAAGAAATCTGAATCTCAGTGGTTGTCATCACCTGCCACTACACCCTATCCAAGCAAGAGCACAAGAATCACAAGAACAAATTTTTCTCGAGCATATACATCACTAGCATCAATTGTACACTGTTATCAATATGCAATAGAAGCAGCAAAGGAGCCTACTTTCAAAGACACAGGAGTAATGGGAATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGCCACATTGTTCGATCCACAGGTAGAAAAGATAGGCACAGTAAGGTTTACACTGCAAAAGGTCCTCGTGATAGAAGGGTTAGGCTATCAGCACACACTGCCATTCAATTCTATGATGTTCAAGATCGTTTAGGCTATGACAGACCCAGCAAGGCTGTGGATTGGCTCATCAAGAAGGCCAAAACAGCCATAGACAAGCTTGCTGAGCTTCCTCCATGGCACCCAACTCCTAACACCACAGAAGAAGCACAAGAGGGAGAGCAAAATGCAGGGTCAAGTGAAATGGCAATTGCAGAACAATCAGAATCTTCCGGTTACAATTTTCAGCTCCAAAGGCAATTAGGTGAGGACCCAGATAACCGCCATTCAGCATTTATTCCATCACCTATTGACACCGATGCCATAGCCTTTTTCCCCACAACTTCTGCTACTTCATCCATCAATTTTCATAGCTACCCTCCTGACATAATCCCAAGAGCCAACAACTCCACACAGGATCTAGGCCTTTCTCTTCATTCATTCCAAGACCCTGGCCTTATTCACGGGCAATCCCAAGCAGGTGCTAATCAAACACCTTCAAATGACCAAACCCTTTTCTCTGGATCAACTCCTGTTGGATTTGAGGCCAATTATCACAGGATTGTGACTTGGAACAATGATGCAGCTTCAGATATGAATAGAACCGGGTTCATGGTCAATTCACCTGCACTTCTTGGCCAAGGTTCTGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTTTCACCATCACTTCGTCCTTGGAATGACATTCCAATGGCTTCCTCAGAACATCACAATCACAAGTCTCAACCAATTCACCAAGCTTCCATCTTTGGTAGCAGGTTTCTTTCTGATGCATTACCAGGAGCTTCACAATGCTGCACCTTTTCTTATCTATCAGGAGGAGCATTGTCTACCAGATTTGAAAACATGGGAAGATAA 1323 0.4422 MSLSKASKGVEASTRSHRPKVFDFLGSAAVAEKLRNQERKEGHRKIKKSESQWLSSPATTPYPSKSTRITRTNFSRAYTSLASIVHCYQYAIEAAKEPTFKDTGVMGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLAELPPWHPTPNTTEEAQEGEQNAGSSEMAIAEQSESSGYNFQLQRQLGEDPDNRHSAFIPSPIDTDAIAFFPTTSATSSINFHSYPPDIIPRANNSTQDLGLSLHSFQDPGLIHGQSQAGANQTPSNDQTLFSGSTPVGFEANYHRIVTWNNDAASDMNRTGFMVNSPALLGQGSAYSQRGTLQSSFSPSLRPWNDIPMASSEHHNHKSQPIHQASIFGSRFLSDALPGASQCCTFSYLSGGALSTRFENMGR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01050 440 MobiDBLite consensus disorder prediction 35 50 - -
Rops7g01050 440 Pfam TCP family transcription factor 128 219 IPR017887 -
Rops7g01050 440 MobiDBLite consensus disorder prediction 51 67 - -
Rops7g01050 440 ProSiteProfiles TCP domain profile. 129 187 IPR017887 -
Rops7g01050 440 MobiDBLite consensus disorder prediction 35 67 - -
Rops7g01050 440 MobiDBLite consensus disorder prediction 197 224 - -
Rops7g01050 440 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 372 IPR005333 GO:0003700
Rops7g01050 440 MobiDBLite consensus disorder prediction 189 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01050 Rops-Chr7 13931290 13933722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01050 113 396 TCP Transcription Factor Family AT3G15030 45.672 6.37e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops7g01050 TCP 4.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01050 - - gmx:100796390 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01050 7 13931290 13933722 Rops7g01050 7 13931290 13933722 ECH