Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01049 ATGGGTGACTTCGATGATGATCGTGACCATTACCCTGGTGGCAATTTCCATCGCTACTCAAGTGAGTTCAACAAGAACATCTTGTTCATAGCCATAGTTTCCTTATCAGCGGTCTTAGTTTTGGTCTTTGCACTTCACCTCTATGCAAGGTTCATCTTTAGACGCCAAGCTCGCCGTAGAGCTGCCATTCACCAACTTAGCCTCACCGTGGCTCATGCTCAATACACTGAATCACCCAACACAGGACTCGACCCTACCCTCATCACTTCCCTTCCCACCTTCCTCTTCAAACGAAAGGGACCTCAACAACAAGAAGAACAAAACCATGCCTACTCAAGTGTTATGGAGTGTGCCGTGTGTTTGAGTGCTTTAGAAGATGAAGAAATGATTAGGTTGCTTCCAAATTGTAAACACATTTTCCACGTTAGTTGCATTGATACATGGCTAGCTTCACACTCCACTTGTCCCATTTGTCGAACCAAGGCTGAACCAAGGCTCGAACCACAGCCACGTGAGGGTCCAACTGGGTTGGTTCTCCATGGTGCACCCTCTGCTCCACTTTTGTTTGAACCACCTGCAGAAGGTACATCAGATGGGACTAGTACTAATACTATTTCAGGGTCACCCAAAATCAATGGTTCAAATTCAAGGTTGAGCTCGTTCAGAAGGATTCTTAGTAGGGAGAGATCGTTAAGGAGAATCCAACCTTCTAGTGGTGATGATATTGATCATGATTTAGAGAGGCAGTGA 750 0.456 MGDFDDDRDHYPGGNFHRYSSEFNKNILFIAIVSLSAVLVLVFALHLYARFIFRRQARRRAAIHQLSLTVAHAQYTESPNTGLDPTLITSLPTFLFKRKGPQQQEEQNHAYSSVMECAVCLSALEDEEMIRLLPNCKHIFHVSCIDTWLASHSTCPICRTKAEPRLEPQPREGPTGLVLHGAPSAPLLFEPPAEGTSDGTSTNTISGSPKINGSNSRLSSFRRILSRERSLRRIQPSSGDDIDHDLERQ* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01049 249 CDD RING-H2_EL5-like 116 159 - -
Rops7g01049 249 SMART ring_2 117 158 IPR001841 -
Rops7g01049 249 SUPERFAMILY RING/U-box 116 170 - -
Rops7g01049 249 FunFam E3 ubiquitin-protein ligase ATL6 71 165 - -
Rops7g01049 249 Pfam Ring finger domain 116 159 IPR001841 -
Rops7g01049 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 165 - -
Rops7g01049 249 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Rops7g01049 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 165 IPR013083 -
Rops7g01049 249 MobiDBLite consensus disorder prediction 222 249 - -
Rops7g01049 249 MobiDBLite consensus disorder prediction 188 249 - -
Rops7g01049 249 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01049 Rops-Chr7 13915820 13916810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01049 6 249 C3H Transcription Factor Family AT2G42360 44.882 7.44e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01049 K19038 - gmx:100780265 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01049 7 13915820 13916810 Rops7g01049 7 13915820 13916810 ECH