Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01038 ATGGATGATGGAGAAATTTCAAATGGTTTCCCTCATCAGAACTCAACCACTGCATCTAATAATCCTCCTGTTTTGAAGAGGAAAAGAAACCTCCCTGGAAACCCAGATCCTGAAGCTGAAGTAATAGCCTTATCACCAAAGACTCTGATGGCCACAAACAGATTCGTTTGTGAAATTTGTCTGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATCGACGTGGGCATAACCTTCCTTGGAAGCTCAAGCAAAGGACAAGCAAAGAAGTAAGGAAGCGAGTGTATGTATGTCCAGAAAAGACTTGTGTCCACCACCATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATAAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGCATTATGCTGTGCAATCAGATTGGAAAGCCCACTCAAAAACCTGTGGTACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGTGATGCCTTAGCAGAAGAAACAGCTAGGGTAACCGCAGCATCAAACATAAACAACTCACTAGGGGGTAACGTTGGTTACAGCCTCATGCAAACTTCCCTTGGGCCTAACATGGCAACCCATTTTTCTTCAATTTTCAAGCCAATTTCATGCACTGAGGAAACTGGTAACCAAACATCAAAGGGGCTATCCCTTTGGATGGCTCATGCATCTCAGGCTCATGAAACAATGACTAATAACAATTTGCATGAGATTCATCAACTTGGGTCTGTAACAACCCCAGCAGGAGCAATATATGGTGGTGGAAACCCACTTGTTCCATGCTCAAATCCACCACCTTCTAATTATCAGCTGAATTGGGTGTTTGGAAATAAACTCTCCACCAATGGAACTCAAGAGCTAACTAGCACTACTTCACTTCCACTAGTGAATATTGTTAAGGACACTCCAAATCAACTTATCAGTGTTCCTTCCTTGTATAGCTCACAACATCAATCCCATCAAATAACCTCAGCAAACATGTCAGCCACTGCTTTGTTGCAAAAAGCTGCTCAATTTGGAACAACTTCAAGTGACCCATCATTCCTTGGGAGCTTAGGATTGAGATGCAACAGTCCAGGACAAGATGGGAACAAATTTTGTGGGATGTACGGTTCTTCAAGTTCAGTACTCACAAGTCATGGGAGTGAGCAAGAGAATTATCAAGATGATTTGTCAAAAATGCCCCCAACAAAACGGAGACACGTGCAGAATGAAGAGAGTGCATGGGGACAAACTAGGGACTTTCTTGGTGTTGGCAGTGCCAACCATTTACCACCCTTCATCAATCAACGGATGGATTTGATTTGA 1383 0.4324 MDDGEISNGFPHQNSTTASNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKHYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVTAASNINNSLGGNVGYSLMQTSLGPNMATHFSSIFKPISCTEETGNQTSKGLSLWMAHASQAHETMTNNNLHEIHQLGSVTTPAGAIYGGGNPLVPCSNPPPSNYQLNWVFGNKLSTNGTQELTSTTSLPLVNIVKDTPNQLISVPSLYSSQHQSHQITSANMSATALLQKAAQFGTTSSDPSFLGSLGLRCNSPGQDGNKFCGMYGSSSSVLTSHGSEQENYQDDLSKMPPTKRRHVQNEESAWGQTRDFLGVGSANHLPPFINQRMDLI* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01038 460 Gene3D Classic Zinc Finger 88 179 - -
Rops7g01038 460 MobiDBLite consensus disorder prediction 1 37 - -
Rops7g01038 460 FunFam protein indeterminate-domain 12-like 34 102 - -
Rops7g01038 460 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Rops7g01038 460 MobiDBLite consensus disorder prediction 402 426 - -
Rops7g01038 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 446 IPR031140 -
Rops7g01038 460 FunFam protein indeterminate-domain 5, chloroplastic-like 109 188 - -
Rops7g01038 460 MobiDBLite consensus disorder prediction 8 24 - -
Rops7g01038 460 MobiDBLite consensus disorder prediction 402 416 - -
Rops7g01038 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01038 Rops-Chr7 13782698 13786143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01038 21 444 IDZ Gene Family AT1G03840 50.840 1.36e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g01038 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01038 K25870 - gmx:100778666 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01038 7 13782698 13786143 Rops7g01038 7 13782698 13786143 ECH