Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01028 ATGGGAGATGGAGATTGCGAGTGCAGGCCATTGGGTTTCTTGCTTGGATTGCCCTTTGCTCTCTTGGCTTTGGTTTTATCTCTTGTGGGTGCTGTTGTCTGGGTTTTGGGATCTATATTGAGTTGCTTGTGCCCATGTTGCATTTGCTGTGCCGGATTGGCCAATTTGGCTGTGAGTCTTGTGAAGCTTCCAATAAAGGTTCTTAAATGATACACCATCAAAACTAGTTGGGGTTCGTCTAACGTTCGACAACAATCTCAAACCACCAGAACATCTTTCCAAAGCCAAAGAAAAGAAGAAGGAGAACCTGAAAGGGTGGAGAGACAGAACAAGAGAAAGAGAGAAGCACCAAACACGGGTGTTGACTATTACAAGGTATTGCAGGTCGATAGAAACGCCAAAGATGATGACTTGAAGAAGGCTTATAGAAAACTTGCCATGAAATGGCACCCCGACAAGAACCCCAACAATAAAGAAGACGCTGAATCGAAATTCAAACAAATCTCAGAAGCTTATGAGGTTCTGAGTGATCCTCAGAAAAGGGCTATTTACGATCAATATGGTGAAGAGGGTTTGAAGGGTCAGGTTCCACCACCTGATGCTTCTTCTAGTGGTGGTGGTGGAACCACTTTCTATACCACCTGTGACATTCCGACGTCGTTTCGGTTCAACCCTCGAAATGCTGATGACCTTTTTGCGGAATTCTTTGGATTCTCGAGTCCCTTTGGAGGGATGGGAGGGATGGGAAGAGGTGGTGGCCGCAGTGGCATGAGATCGAGGTTCTCCAATGGGATGTTTGGAGATAACATTTTTGGATCTTTCGGTGAAGGAGGAGGGCTACATGTGAATCAAGGTGCTCCTCATAAGGCTCCTCCCATTGAGAACAGGTTGCCCTGCACCCTTGAGGAGATATATAAAGGGACCACAAAGAAGATGAAGATCACCAGAGAGATTGTTTATGCCTGTGGCAAAACCAAGCAGGTGGAGGAGATCTTGACAATTAATGTTAAGCCTGGATGGAAGATGGGGACGAAGATCACTTTCCCTGAAAAGGGGAATGAGCAACCAAATGTGATACCTGCAGACCTGGTGTTCATCATTGATGAAAAACCACACAGTGTTTTCACTAGAGATGGGAATGATCTGATCGTCGCTCAAAAGATTTCTCTTGCAGAAGCCTTGACTGGCTATACGGTCAACCTCACTACACTGGATGGTAGAAACTTAACCATATCAATCAATAATGTTATCCATCCTGATTATGAGGAGGTTGTTGCGAGAGAAGGAATGCCACTCCCTAAAGATCCAACAAAGAAGGGAAATTTGAGGATAAAGTTCAACATCAAATTCCCAACCCGGCTCACTGCAGATCAAAAGGCAGGAATCAAGAAACTCTTGGCTGCCTAA 1407 0.4506 MGDGDCECRPLGFLLGLPFALLALVLSLVGAVVWVLGSILSCLCPCCICCAGLANLAVSLVKLPIKVLK*YTIKTSWGSSNVRQQSQTTRTSFQSQRKEEGEPERVERQNKRKREAPNTGVDYYKVLQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKEDAESKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDASSSGGGGTTFYTTCDIPTSFRFNPRNADDLFAEFFGFSSPFGGMGGMGRGGGRSGMRSRFSNGMFGDNIFGSFGEGGGLHVNQGAPHKAPPIENRLPCTLEEIYKGTTKKMKITREIVYACGKTKQVEEILTINVKPGWKMGTKITFPEKGNEQPNVIPADLVFIIDEKPHSVFTRDGNDLIVAQKISLAEALTGYTVNLTTLDGRNLTISINNVIHPDYEEVVAREGMPLPKDPTKKGNLRIKFNIKFPTRLTADQKAGIKKLLAA* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01028 467 ProSitePatterns Nt-dnaJ domain signature. 164 183 IPR018253 -
Rops7g01028 467 Gene3D - 371 451 - -
Rops7g01028 467 PRINTS DnaJ domain signature 159 179 IPR001623 -
Rops7g01028 467 PRINTS DnaJ domain signature 123 141 IPR001623 -
Rops7g01028 467 PRINTS DnaJ domain signature 141 156 IPR001623 -
Rops7g01028 467 PRINTS DnaJ domain signature 179 198 IPR001623 -
Rops7g01028 467 MobiDBLite consensus disorder prediction 82 116 - -
Rops7g01028 467 SMART dnaj_3 120 179 IPR001623 -
Rops7g01028 467 MobiDBLite consensus disorder prediction 94 116 - -
Rops7g01028 467 Gene3D DnaJ domain 119 245 IPR036869 -
Rops7g01028 467 SUPERFAMILY HSP40/DnaJ peptide-binding domain 373 459 IPR008971 GO:0006457|GO:0051082
Rops7g01028 467 MobiDBLite consensus disorder prediction 189 208 - -
Rops7g01028 467 Pfam DnaJ domain 121 184 IPR001623 -
Rops7g01028 467 FunFam DnaJ subfamily B member 13 120 245 - -
Rops7g01028 467 Pfam DnaJ C terminal domain 292 450 IPR002939 -
Rops7g01028 467 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 121 465 - -
Rops7g01028 467 FunFam Dnaj homolog subfamily b member 288 369 - -
Rops7g01028 467 Gene3D - 291 369 - -
Rops7g01028 467 FunFam DnaJ subfamily B member 13 371 451 - -
Rops7g01028 467 SUPERFAMILY HSP40/DnaJ peptide-binding domain 287 380 IPR008971 GO:0006457|GO:0051082
Rops7g01028 467 SUPERFAMILY Chaperone J-domain 120 243 IPR036869 -
Rops7g01028 467 CDD DnaJ 121 176 IPR001623 -
Rops7g01028 467 CDD DnaJ_C 290 453 - -
Rops7g01028 467 ProSiteProfiles dnaJ domain profile. 121 187 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01028 Rops-Chr7 13662462 13668618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01028 122 186 C2H2 Transcription Factor Family AT1G74250 37.681 7.28e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01028 K09510 - gmx:100778672 555.444