Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01027 ATGTTAGCGGTGTCACCTTTGAGGAGCACAAAAGATGAAAACCAAGGAGAGATTGAAAGCTTCTCGATTGGAACTGATGATTTTGCTGACCTTTCTGATGGGAACTTGTTGGAAAGCATAAACTTCGATGATCTCTTTGACGATGGAGATGTCTTGCCGGATTTGGAGGTGGACCCTGAAATGCTTGCTGAGTTCTCACTCAGTGCTGGTGAGGAATCAGAGATTAACTCATCAGTTTCAGTTGGAAATAGCAAATATGATGATGGGAATATAGTTATTACTACTACGAAAAAGCAAGATGAAGATAAAGGGGTTTCTTCAGATTCTGGATCAAGTCGAGGGGAGGAGACAGTGAGCAAAAGAGATGAATCAGTGGTGGTGAGTCCATCGAATAAGGAAAGTGAGAAAGGAAGAAAATCATCAACTCAATCTAAGAATCCTCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAACAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGCGAATTGACTGTCTCACCCGCCATAACATAGCTAGCCACCTTCAAAAATATCGATCACATAGGAAGCATTTGCTAGCTCGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGTGCAGCAGCAGCTGGAGGTAGAGGAGGAGGAGGAAGCAAAAGAGACATTAACCCTTGGCTTGCACCAACCATGGGTTTCCCTCCCATGACATCAATGCACCATTTTAGACCCTTACATGTATGGGGGCATCATCACATGTGGCCTAAACACCTACCATATGCAACATCACCACCAACATGGCCACCAAGGACAGCTCCACCACCACCAACTCATGACCCATCATATTGGCACCATGCTCAAAGGGCACCAAACGCACCAACCCCAGGAACACCGTGTTTTCCACGACCTCTGACAACAACGAGATTTAGTTCTCCAACTGTTCCGGGCATTCCACCACCTCATGCCATGTATCAAGTAGATCCCGGAATTGGTGTCCCCGCCGGCCAAACAGCTCCTCCACCACTCTTCGACTTCTATCCGTCAAAGGAGAGTATAGATGCAGCTATTAGTGCTGTTTTATCAAAACCATGGTTGCCACTACCTCTTGGCCTTAAAGCTCCAGCACTTGATGGTGTGATGGGTGAATTACAGAAACAAGGAATTCCTAAAATTCCACCCTCTTGTGCTTGA 1254 0.4625 MLAVSPLRSTKDENQGEIESFSIGTDDFADLSDGNLLESINFDDLFDDGDVLPDLEVDPEMLAEFSLSAGEESEINSSVSVGNSKYDDGNIVITTTKKQDEDKGVSSDSGSSRGEETVSKRDESVVVSPSNKESEKGRKSSTQSKNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMRIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGAAAAGGRGGGGSKRDINPWLAPTMGFPPMTSMHHFRPLHVWGHHHMWPKHLPYATSPPTWPPRTAPPPPTHDPSYWHHAQRAPNAPTPGTPCFPRPLTTTRFSSPTVPGIPPPHAMYQVDPGIGVPAGQTAPPPLFDFYPSKESIDAAISAVLSKPWLPLPLGLKAPALDGVMGELQKQGIPKIPPSCA* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01027 417 MobiDBLite consensus disorder prediction 70 93 - -
Rops7g01027 417 FunFam Two-component response regulator 148 211 - -
Rops7g01027 417 Pfam Myb-like DNA-binding domain 155 204 IPR001005 -
Rops7g01027 417 MobiDBLite consensus disorder prediction 67 154 - -
Rops7g01027 417 MobiDBLite consensus disorder prediction 1 28 - -
Rops7g01027 417 Gene3D - 149 210 - -
Rops7g01027 417 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 416 IPR044825 GO:0003700|GO:0045893
Rops7g01027 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 208 IPR017930 -
Rops7g01027 417 MobiDBLite consensus disorder prediction 94 140 - -
Rops7g01027 417 NCBIfam myb-like DNA-binding domain, SHAQKYF class 152 206 IPR006447 GO:0003677
Rops7g01027 417 SUPERFAMILY Homeodomain-like 150 209 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01027 Rops-Chr7 13635024 13639270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01027 29 280 G2-like Transcription Factor Family AT5G44190 49.231 3.58e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops7g01027 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01027 - - gmx:100790591 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01027 7 13635024 13639270 Rops7g01027 7 13635024 13639270 ECH