Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01022 ATGGCTTCGTTGTTCAAGGATCTATCGAAGCTTTCGGCGTATAGAGATAGAAGATTCCCTGGAACTCAAGAAGAGTTTGAGCATGCGCTTCTGACTTCTACCACCGTTTACGTTGGGAACATGTCGTTTTACACAACGGAGGAGCAAGTTTACGAACTGTTTACTCGTGCTGGAGAAATCAAGAAGATCATCATGGGATTGGATAAGAACACCAAAACACCATGCGGATTTTGTTTCGTTTTATATTACTCGCGTGAAGATTCTGAGGATGCTTGCAAATACATGAGTGGGACGATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGAGGGCAGACAATGGGGTCGCGGTCGAAGTGGTGGCCAGGTGCGGGATGAATATCGCACTGATTATGATCCAGGTAGAGGTGGTTACGGGAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGATCTTTCCCGCCAGTTATTCCTCCTTCATATGGTAGACATGTTGGAGGCCATGGTCATGGTGGTTCCCATCGACATGGCAGAGATTACTATAGGAAGAGACACAGAGACGATGACCGCCACCACCACCACACACACGAATCCTCAAAAAGGACATCAGATCATGAATCCCGGAGGAATTCTGACCATGAATCACGTCCGGAAAAAAATCCGCGATTTCGTGAGAGTGGTGATTCTGATGATGACGAGGACGATGATAGAAAAAGACGGGCTTAA 771 0.463 MASLFKDLSKLSAYRDRRFPGTQEEFEHALLTSTTVYVGNMSFYTTEEQVYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDSEDACKYMSGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPPSYGRHVGGHGHGGSHRHGRDYYRKRHRDDDRHHHHTHESSKRTSDHESRRNSDHESRPEKNPRFRESGDSDDDEDDDRKRRA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01022 256 MobiDBLite consensus disorder prediction 124 138 - -
Rops7g01022 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Rops7g01022 256 MobiDBLite consensus disorder prediction 197 256 - -
Rops7g01022 256 MobiDBLite consensus disorder prediction 120 140 - -
Rops7g01022 256 CDD RRM_NCBP2 36 113 IPR034148 -
Rops7g01022 256 Gene3D - 6 150 IPR012677 -
Rops7g01022 256 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Rops7g01022 256 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 254 IPR027157 GO:0000339|GO:0005846|GO:0045292
Rops7g01022 256 MobiDBLite consensus disorder prediction 173 256 - -
Rops7g01022 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Rops7g01022 256 SMART rrm1_1 35 108 IPR000504 GO:0003723
Rops7g01022 256 SUPERFAMILY RNA-binding domain, RBD 28 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01022 Rops-Chr7 13591244 13594820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01022 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 29.870 2.02e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01022 K12883 - gmx:100776217 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01022 7 13591244 13594820 Rops7g01022 7 13591244 13594820 ECH