Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01017 ATGAGCATTGTTTGTGCTGAGCAACACAAGTTTCACCCTTCTCACCAACTCCTTTCACCAAAGAAGTCCCTTAGAGAAATTGACATCCCACCAAGGAAGCTCCTCACTCGCCGCACCACCACCGCCGATGACACCATCCTCCAAAATTTCCTCCCTCACAACGACTCCTCCGACTCCGATTCCGACGACCCTTATTCCGCTGATCACTTTCGTATGTATGAGTTCAAAATCCGTCGCTGTACCCGTAGCAGAAGCCATGATTGGACAGATTGCCCTTTTGCTCACCCCGGTGAGAAAGCACGCCGCCGTGACCCCCGCAGGTATCATTACTCCGGCACGGTGTGCCCGGAGTATCGCCGTGGAGGGTGTAGCCGTGGTGATAACTGTGAATTCGCACATGGGGTATTTGAGTGCTGGTTGCACCCTTCAAGGTACAGAACTGAAGCATGCAAAGATGGTAAGAATTGCAAGAGAAAAGTGTGTTTCTTTGCGCACACACCTCGTCAACTAAGAATCTTACCAGTGAGTTCTGATAATAATTCTTCAAATGAAAACTCATGCATTAACAAGAAGAGCAAGTTCTTCAACTCTATTTCAAGATCAAACAACAACAACAACAACTGTTGTTTGTTTTGCCATTGTTGTAATTCACCAACTTCCACGCTTTTTGGCATGTCTCATTTCTCACCACCGTTGTCACCGTCGTCTTCTCCACCTCTTTCTCCATTGAAACCACGAAACAGTGCCGTTTCACGTTATGGTATGGTGAATAATCATCATGGGGTGGTGAGTTACAAAGATGTTGAAACTCAGTTGATGAGTTCTTTTGAGGGTTTGAGTTTTGGTGAGGGTTCACCAGTTTCTGCTTCCAAAGCTTCGAACTTTCCATGGCTTGATGTTCATTTTAACTGTGAGGATCAGCAACAGTTCAATATTTCGCCTTCGGTTTCTTCTTCTTTCAGCTGTGAAGATCAACAACAGTTTATTCTTTCACCTTCAACTATGACCCCAACAAGCTTCAAGGGGAAATATTCAAACAGAAAATTCTTCAGTGAAGACAATAACAACAACAACAACAAAAACAATGTTGTCGGTGCTGACATTAATGGGTCATCTTGCCCTGTCCCAGATCTCGGATGGGTGAATGAGTTGCTGATGTAA 1161 0.4488 MSIVCAEQHKFHPSHQLLSPKKSLREIDIPPRKLLTRRTTTADDTILQNFLPHNDSSDSDSDDPYSADHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDNCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRILPVSSDNNSSNENSCINKKSKFFNSISRSNNNNNNCCLFCHCCNSPTSTLFGMSHFSPPLSPSSSPPLSPLKPRNSAVSRYGMVNNHHGVVSYKDVETQLMSSFEGLSFGEGSPVSASKASNFPWLDVHFNCEDQQQFNISPSVSSSFSCEDQQQFILSPSTMTPTSFKGKYSNRKFFSEDNNNNNNKNNVVGADINGSSCPVPDLGWVNELLM* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01017 386 ProSiteProfiles Zinc finger C3H1-type profile. 110 136 IPR000571 GO:0046872
Rops7g01017 386 Gene3D - 109 173 - -
Rops7g01017 386 SUPERFAMILY CCCH zinc finger 108 138 IPR036855 GO:0046872
Rops7g01017 386 PANTHER UNKEMPT FAMILY MEMBER 43 385 IPR045234 -
Rops7g01017 386 FunFam Zinc finger CCCH domain-containing protein 66 67 135 - -
Rops7g01017 386 Pfam CCCH-type zinc finger 114 134 IPR041367 -
Rops7g01017 386 SMART c3hfinal6 109 135 IPR000571 GO:0046872
Rops7g01017 386 SMART c3hfinal6 144 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01017 Rops-Chr7 13517954 13519394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01017 62 171 C2H2 Transcription Factor Family AT5G07500 68.182 2.27e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops7g01017 zf-CCCH_4 7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01017 K23047 - gmx:100801371 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01017 7 13517954 13519394 Rops7g01017 7 13517954 13519394 ECH