Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01016 ATGCCAGCCCAGAAGCGTTCCTTGGCTGAGTCAATGGACGATGGGGACACTTCGCAGCAACACCTCTTCCATTCTCCTCGCCATGCCAAGCAACAACCTCACTCCAACGACCAACAACAACAACAAGAGCAAGAGAAGGAACAAGAAGAAGAAGACGATGATGAAGAGCAACAAGAGGAGGAAGAGGAGCAAGGGGATGAAGAAGGAGAAGAGGAAGAAGAAGATGAAGAAGAAGAAGAACGAGGAGGAGGAGGAGAAGAAGAAGGGCAACGACATAGTAACCATGTTAAGGAAAAATCACCGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCCGAATTTGTGTTTGTAGAACTTCAGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGATTTTGCAGGGAATGCATTGACAAATCGATGCGACTAGGGAACAACGAGTGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGCTCTTTGAGAGATGATCCAAACTATGATGCCCTTATAGCTGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCGATAGCAAAAGTAGTTCAACGGCAATCTGAAGCACTGGTTAAGAGACGTAAAGACACCCCGGGTGGATTTGTGACAAGATCACAGCGTAATCAAAGGAACATTCATTCTAGGAGACAAAACCAAGTGATTGATATTCAAGGATCTGAAGATAATGAGGAGGAAAATGACAACAATGAAAAAGACTCATCTTCTGCTGATGAGCGGTGTATAGAACTCCGGCAGAGAAGGCGAAAAAGATGGACCCGAGTTCGCCCCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGAGGCGCAGAAAGTGATGCGGATATTAGTAGAGAAAATCGAGGAATTTCAAGGCAGGTATCAAAACCTCAAAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACCCGACATGGCAGTGGTGGTGGTAGCAATAGCAAAAGTTCCCGCAGCAGTCGATTGTCTAAGTTGGTTGATCATCTTCGAAGCTTGGATGAAAACGCTGATGAGTTTGATGTCCATCTCATGCTTTATGCTCTGGACAAACAAAGTACACCAGGCTTGGAGCAGCCACACCTTTGCTGTCGACCAACTTTGACTGTCAAGCACCTTTGTGAATATGTTGCGCGGCAGACACCTTTGCCAGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATTAAGCTGCAATACAAATTGTGACAAGTCAGATGATGTGAATTCAGCCCTTCTATGTGATGAACTAACAACACTGGTTATAGATCCAAGCAAAGATGAACTGGAAGTTTTGCAAGATCATGAATCTCTAGCAGAGATTAGATCCAAATGCATATCTAAAATGGCACATTTGATTCTGGCATACAGGCGGAAGGAGGCATCATAA 1539 0.4464 MPAQKRSLAESMDDGDTSQQHLFHSPRHAKQQPHSNDQQQQQEQEKEQEEEDDDEEQQEEEEEQGDEEGEEEEEDEEEEERGGGGEEEGQRHSNHVKEKSPDSDETPSSGSEEKPEFVFVELQEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPGGFVTRSQRNQRNIHSRRQNQVIDIQGSEDNEEENDNNEKDSSSADERCIELRQRRRKRWTRVRPSQPSSSMASPDGGGAESDADISRENRGISRQVSKPQKLTWGRGGFRSHTRHGSGGGSNSKSSRSSRLSKLVDHLRSLDENADEFDVHLMLYALDKQSTPGLEQPHLCCRPTLTVKHLCEYVARQTPLPVEEVEILAVKGLSCNTNCDKSDDVNSALLCDELTTLVIDPSKDELEVLQDHESLAEIRSKCISKMAHLILAYRRKEAS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01016 512 Coils Coil 36 80 - -
Rops7g01016 512 MobiDBLite consensus disorder prediction 244 267 - -
Rops7g01016 512 Coils Coil 197 228 - -
Rops7g01016 512 PANTHER OS11G0578200 PROTEIN 1 510 IPR044592 -
Rops7g01016 512 SMART ring_2 131 170 IPR001841 -
Rops7g01016 512 MobiDBLite consensus disorder prediction 84 114 - -
Rops7g01016 512 CDD RING-HC_RING1-like 128 193 - -
Rops7g01016 512 MobiDBLite consensus disorder prediction 44 83 - -
Rops7g01016 512 MobiDBLite consensus disorder prediction 357 371 - -
Rops7g01016 512 ProSiteProfiles Zinc finger RING-type profile. 131 171 IPR001841 -
Rops7g01016 512 MobiDBLite consensus disorder prediction 1 114 - -
Rops7g01016 512 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Rops7g01016 512 MobiDBLite consensus disorder prediction 231 373 - -
Rops7g01016 512 Pfam Zinc finger, C3HC4 type (RING finger) 130 170 - -
Rops7g01016 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 201 IPR013083 -
Rops7g01016 512 SUPERFAMILY RING/U-box 121 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01016 Rops-Chr7 13489746 13497743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01016 123 194 C3H Transcription Factor Family AT3G23060 34.667 2.65e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01016 K10695 - gmx:100776547 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01016 7 13489746 13497743 Rops7g01016 7 13489746 13497743 ECH