Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01015 ATGGAGCCAAAGGTGGTGATGGTGAAGAAGAGGGAGGGCGTTGTTGCTGATGACCAAAATGGATACTTGGAGGAAGATAAGAAGAAAAAAGGGGTAGTGGGTAGTGGTGGGAAGAAAGGGTCTAGTGGTGGAGGAAGTGGTGAAATGCGGTGTTGTCAAGCTGAGAAGTGCAACGCTGATCTTAATGATGCTAAGCAGTATCATAGGAGGCACAAGGTGTGTGAATATCATGCTAAGGCTCAGGTTGTGCTTGTTGGTGGCACACGACAACGTTTTTGTCAGCAATGTAGCAGATTCCATGAGTTAGGTGAATTTGATGACACAAAAAGAAGTTGCCGCAAGCGTTTGGCTGGACACAATGAAAGGAGAAGAAAGAACTCAGAGTCTCAAGCAGAAGGATCAAGCCGCAAAGGGACAGGCCCTCAGTTGAAGAAGGACATTGCTTGTGGACAAGCTGATGATAGGGGGAGAATTCAGATAACAATCCAAGAAAATGCAGCTTACAAACATTTTCAGATAAGATGA 525 0.4533 MEPKVVMVKKREGVVADDQNGYLEEDKKKKGVVGSGGKKGSSGGGSGEMRCCQAEKCNADLNDAKQYHRRHKVCEYHAKAQVVLVGGTRQRFCQQCSRFHELGEFDDTKRSCRKRLAGHNERRRKNSESQAEGSSRKGTGPQLKKDIACGQADDRGRIQITIQENAAYKHFQIR* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01015 174 MobiDBLite consensus disorder prediction 116 146 - -
Rops7g01015 174 MobiDBLite consensus disorder prediction 19 33 - -
Rops7g01015 174 SUPERFAMILY SBT domain 50 129 IPR036893 GO:0003677|GO:0005634
Rops7g01015 174 Gene3D - 42 113 IPR036893 GO:0003677|GO:0005634
Rops7g01015 174 FunFam Squamosa promoter-binding-like protein 14 43 113 - -
Rops7g01015 174 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 135 IPR044817 GO:0003677
Rops7g01015 174 Pfam SBP domain 52 125 IPR004333 GO:0003677
Rops7g01015 174 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Rops7g01015 174 MobiDBLite consensus disorder prediction 19 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01015 Rops-Chr7 13483331 13484743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01015 50 174 SBP-box Gene Family AT3G15270 55.906 2.30e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops7g01015 SBP 6.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01015 - - zju:107406208 237.269