Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01013 ATGGTTACCACTGAAAGAATGGAGCTTTGGTTGTTCAAGAGGAGGGGGCTTGGAATGTTGTTCAAGATTGCATTTTGGTGGTGGGTTGTTCCACTGTTACTTAGTCCTGTGGAGGGTCTCAGACCCTTGAGGGAAAGAACTCGGTCCTGGGGTGATGAGTGGCCATTTACAAGAAGGGATGAGAGTGACATAGGTCCATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACTTGGAAGTTTTTAGATACCACAAATGGCTCTTCCAGATTTCCAGACATCAAAAAAACAAATGGCAATTCTGTAATTGAATTAGTTAGTACACCCACAAAGATAACTGGAGTACATTATGTCCATGGGGTAGTTATATTCCATGATGTGTTTGACAACGGATATGAAGTTAGTGGTGCTAAAATCAGAGTAGAAGGTGTATATATATGGCCTTTTAGGCAGCTTCGAATGGTGGCAAACAGTGGAAAAGAAGGAGACTTGAATCAGGATGAAGATCATATTTTATCCAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTATTGCAAGATTCTTCGCGACATAAGATGTGGAGAAGAAAACATTCTCTGATGCATGACATGGAGAAACATTGTAATACTGAAATTGCTGCACAAATTTCACACTTGCCATCATCAAAAAATGAAGGCGAGCATGACCATTTTCATCTAGAAGGGTTAATGGAGAGTCCCTCAGCAGATGACGATGGTGACTGCTTCTCACCATTACTCTTAAATGCAACTTCTGTTAAAATGGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCTTTCTTGCAAGTTCTTCTATTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACATCTGACTGCCGGAATACTTGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTAGCCATCTGGAAGGCAAATAGGCCTTTGAGTAACGGGGAAGGTTGGGAGACAATGAGGCGTGAACTTTCACTTTTATACAGTCGTTTCTATGGAATCCTATTGGGAGGCATTCTACTCATGTATGAGTTCCATAATCATTTGAAACCTATTCTTCTTCTTATGTACTCCTTTTGGATACCTCAGATAATCACCAATGTTATTCGTGATTCACGCAAACCATTGCATCCTCATTATATAATAGGGATAACTGTTACTCGGGTGGCAGTCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGCATTGAACCAGACAAGAGCTGGTGTGTTTGTTTAGCTGTATTTATTGGACTTCAAGCTGCAATGCTTCTACTTCAGCACTATCTTGGATCGCGTTGGTTCATTCCTCGTCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTGATCATGATACAAGACATGTTATAGACTGTGTTATTTGCATGACAGCTATTGATCTTTCCCAGAGAAATCATGATTGCATGGTAACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGCCGCACTTTACCACCTGCCTAG 1710 0.4035 MVTTERMELWLFKRRGLGMLFKIAFWWWVVPLLLSPVEGLRPLRERTRSWGDEWPFTRRDESDIGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIKKTNGNSVIELVSTPTKITGVHYVHGVVIFHDVFDNGYEVSGAKIRVEGVYIWPFRQLRMVANSGKEGDLNQDEDHILSNPYHLLGVFSSQVLQDSSRHKMWRRKHSLMHDMEKHCNTEIAAQISHLPSSKNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKMEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSLLYSRFYGILLGGILLMYEFHNHLKPILLLMYSFWIPQIITNVIRDSRKPLHPHYIIGITVTRVAVPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAMLLLQHYLGSRWFIPRQILPEKYSYYRRFDHDTRHVIDCVICMTAIDLSQRNHDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRTLPPA* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01013 569 PANTHER RING ZINC FINGER PROTEIN 120 568 - -
Rops7g01013 569 ProSiteProfiles Zinc finger RING-type profile. 519 563 IPR001841 -
Rops7g01013 569 Pfam Ring finger domain 518 563 IPR001841 -
Rops7g01013 569 CDD RING-H2_TUL1-like 513 568 - -
Rops7g01013 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 515 569 IPR013083 -
Rops7g01013 569 SMART ringv_2 518 563 IPR011016 GO:0008270
Rops7g01013 569 SMART ring_2 519 562 IPR001841 -
Rops7g01013 569 FunFam E3 ubiquitin-protein ligase, putative 505 569 - -
Rops7g01013 569 SUPERFAMILY RING/U-box 507 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01013 Rops-Chr7 13455340 13465415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01013 518 567 C3H Transcription Factor Family AT1G53010 37.255 1.32e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01013 K23788 - gmx:100780140 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01013 7 13455340 13465415 Rops7g01013 7 13455340 13465415 ECH