Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01006 ATGGATCATCAACGTTGTCCTTCAACCAAAGTCGAAAGAAGGATCGTTGAGAAAAACAGGAGAAACAAGATGAAGAGCCTCTGTTCCAAACTCATCTCTCTTCTCCCTAACTATAATTCCAAAGAATTGTTGCCATTGCCTGATCAAATAGATGAGGTTATCAACTACATCAAGAGCCTAGAGACAAAGGTGAAGGTGGCACAAGAAAAGAAAGAAAACTTAATCGGAAGGAAGAGATCTCGTGGTAGCTGCTCGAGTGCTTCTGAAGCAAAAGGAAGCCTAAAATCACCAAAAATCGAGATTCATGAAATGGGTTCCTCACTACAAGTCATTCTAACGTGTGGGGTTGATGACTGGTTCATTTTCATTGAAGTTATTCGAATACTGCGTGAAGAGAACGTAGAGGTCATCACTGCCAATTCTTCAATGGCTGGAGATTCAATGCTTCATGTTGTGCACTCGCAGATTCAGCAATCTTTCTTTCAATTCGGAGCGACCAAAGTAAGTGAGAGACTGAAAAGGTTTGTGAATGGATCCGTCAGTGATGTGGAAATGGAACCTGAATTGTGGGATTTTGAAATTGGTACTGAGATTTGGGAGCTTCTAGATCCCACAGTAAACAATGGTTCACAGAGATTAACATCTCCAGCTTGTAACTCATTTTAA 666 0.4084 MDHQRCPSTKVERRIVEKNRRNKMKSLCSKLISLLPNYNSKELLPLPDQIDEVINYIKSLETKVKVAQEKKENLIGRKRSRGSCSSASEAKGSLKSPKIEIHEMGSSLQVILTCGVDDWFIFIEVIRILREENVEVITANSSMAGDSMLHVVHSQIQQSFFQFGATKVSERLKRFVNGSVSDVEMEPELWDFEIGTEIWELLDPTVNNGSQRLTSPACNSF* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01006 221 Coils Coil 50 77 - -
Rops7g01006 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 75 IPR036638 GO:0046983
Rops7g01006 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
Rops7g01006 221 Pfam Helix-loop-helix DNA-binding domain 11 61 IPR011598 GO:0046983
Rops7g01006 221 FunFam Transcription factor bHLH162 1 86 - -
Rops7g01006 221 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 176 - -
Rops7g01006 221 Gene3D - 3 88 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01006 Rops-Chr7 13347819 13349086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01006 8 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.556 2.26e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g01006 HLH 4.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01006 - - mtr:25487667 275.789